Rhincodon typus (whale shark): 109931351
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Entry
109931351 CDS
T06055
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109931351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109931351
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109931351
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
109931351
NCBI-ProteinID:
XP_020386226
LinkDB
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Position
14:complement(24501552..24598222)
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AA seq
524 aa
AA seq
DB search
MATEMDSLGSAAESTAAPGGGLDADDDEENWLYGDENPGKQEEVALVDGSEDSLKSLQEP
SQEFKVSNLEMAEAASQNGDEDDSDSDSDDDDVKVTIGNIKTGAPQYMGTPMNLNLKSGR
PYGSSAAKLHSRGIDLDAPGSINGIPVIEADLDLFEDKPWRKPGADLSDYFNYGFNEETW
KAYCEKQRRLQLGLDPILASASESKKLVQQGKVSNVEKDLENNLPKMELKADFTSPPGGR
MKAGPPPNRKLAGAIDVISGYTGSIRRVEGRRRDKHGGDESAIQVLGDHGNKRPPFPATA
GPPPPIPGPPPHFLHPPPPVNSGPPPMHPPGMPPPGPLPALFPPPVVPPPSLLMPTIDGG
PPPGYDNRPPPLFPYSTADSGLIGYPAISTTHTSWMNTVEKSTNSHWDYQGHRREREREH
DRDRNRERDRGPTPTTSEYSRERNYDRDYHRSRDRSRDREDRHRERRHKDKDDSKHKSSR
RKQHESEEGESHRRHKHKKNKRNKEDKEIGDEGAAETEGTETKD
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgaaatggattcgctgggctcggctgcggagagcacggcagcgcctggcggc
ggcctggacgccgacgatgatgaagagaactggctgtatggggatgaaaaccctggaaaa
caagaggaggtggctttggttgatgggagtgaagattctttaaaatcgctgcaggagccg
tcacaagaattcaaagtcagcaatttggaaatggctgaggctgcttcacaaaatggtgat
gaggatgacagtgacagcgacagtgatgacgatgatgtgaaagtcaccattggcaacatt
aagactggtgcacctcaatatatggggactccaatgaacttgaatctgaagagtggacgg
ccttatggctcttctgcagcaaagttgcattccagaggcattgatttagatgcccctggg
agcatcaatgggattccagtgattgaagcagatttggatttgtttgaagacaaaccttgg
agaaaaccaggagctgatctttctgattattttaactatggcttcaatgaagagacctgg
aaagcttattgtgagaaacaacgaagactccagttaggacttgatcctatacttgcttct
gcttcagagagcaaaaaattggttcagcaagggaaggtaagcaacgtagagaaggacctg
gaaaacaatttaccaaaaatggaattgaaagctgattttacatctcctcctggcggaagg
atgaaagcaggcccaccgcctaatagaaaacttgctggcgcaattgacgttattagcgga
tatacgggttccatcaggagggtagaaggaaggcgacgagacaaacatggaggagatgag
agtgcaattcaggttcttggagaccatggaaacaaaagaccaccatttccagctacagca
ggtcctcctcctccaatacctggaccaccccctcattttttacacccaccccctcctgtc
aacagcggaccaccacccatgcacccaccaggaatgccgccacctgggcctcttccagca
ttatttccaccaccagttgtgccgcctccatcattactgatgccaaccatagacggtggt
ccgcctccaggctatgacaacaggccacctcctttattcccctatagtactgcagattct
ggactaattggttatcctgctatctccacaacacacacatcctggatgaacactgtcgaa
aaaagtaccaacagccactgggactaccaaggacatcggcgagaaagagagcgagaacat
gatcgagacagaaatcgtgagcgagatcgtggcccaacaccgacaacgtctgagtacagc
agagaacgtaactatgacagagactatcatcggagcagagatcgcagtcgagacagagaa
gatcgccacagagaaaggcggcacaaggacaaagatgattccaaacacaaatcctcaaga
cgcaaacaacatgagagtgaggaaggagaaagtcacagacgtcacaaacacaagaaaaat
aaacgaaacaaagaggacaaagaaattggggatgaaggtgctgcagagactgagggaact
gaaactaaagactaa
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