Rhincodon typus (whale shark): 109931364
Help
Entry
109931364 CDS
T06055
Symbol
cnot4b
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X3
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109931364 (cnot4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109931364 (cnot4b)
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109931364 (cnot4b)
04121 Ubiquitin system [BR:
rtp04121
]
109931364 (cnot4b)
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109931364 (cnot4b)
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109931364 (cnot4b)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109931364 (cnot4b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109931364 (cnot4b)
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109931364 (cnot4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-RING_2
zf-C3HC4_2
DZR_2
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
109931364
NCBI-ProteinID:
XP_020386238
LinkDB
All DBs
Position
18:complement(2749928..2899668)
Genome browser
AA seq
762 aa
AA seq
DB search
MSRSPDTKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLHQSSSTVDKNKNKLATQQRYDAPNCSNNDAWPSLLSTAKAANGLILEH
RKTPPIIDNGSEPEHMTPDGPGTELRPVDKPPEALSLGNGDNLQQIPTSETPSPPPGLTK
PNPVVPISSSNHNARSPFEGAAAESQSLFSDNSNFRHPNPLPNSLLYPTSSPSTHDWPTA
PEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQD
QPSNTSLTSLTSLQTPPQTANKGIGGFLTPSAATTANSIGNSFPNSILPRRFPAFQHRAV
YNSFSFPGQARYPWMAYPHNSMMHLNHTATPTSNSNFLDLNIPPHSTGLGGIPISDSSSN
VASLNVKEWQDGLRALLPNININFGGLPNAASCSSVNHAAPTSSNSTSLNWESGSGWMDP
AIITGVPASTGNSLDTLQDENPPHWLKSLQTLTEMDGPTAAQTGHSNPFNTQIPLHRAGW
TPYPPPSNPGNFHSPPPGFQSTFRPPNKTPTDLLQSSTLDRH
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtagccctgatacaaaagaggatcctgttgaatgccctctctgtatggagccc
ctagagatagacgatatcaacttctttccatgcacctgtggctaccagatctgtcgtttc
tgttggcaccgtatacgcacagatgagaacggtctctgtccagcctgcagaaaaccttac
ccagaagaccctgcagtctacaaaccactttctcaagaagagctacagagaataaaaaat
gagaaaaaacaaaagcagaatgagaggaaacagaaaatctcagagaaccgcaagcatttg
gccagtgtacgtgttgtacagaagaacctagtctttgtggtaggtctatcacagcgacta
gcagatccagaggttttaaaacggccagaatatttcgggaagtttggtaaaatacataaa
gttgtcatcaacaacagcacatcatatgcaggttcacagggtcccagtgctagtgcttat
gtaacctacatacggtctgaagacgcactaagagcaatacagtgtgtaaataatgttgta
gtggatggcaggacacttaaggcatctttaggtacaacgaagtattgcagttatttccta
aagaacatgcagtgtcctaaaccggattgtatgtatttgcatgagctaggggatgaagca
gccagtttcacaaaagaagaaatgcaggcaggcaaacatcaagagtatgaacagaagttg
cttcaggaactttataaattgaaccccaactttttgcaccagtcatccagcacagtcgac
aaaaataagaataaattggctacacagcagaggtatgatgcacccaactgtagtaataac
gatgcctggccgtcattactgagcacagctaaagcagccaatggtttaatactcgaacac
aggaaaacgcctcctataattgataatggttcagaacccgaacacatgaccccagatggt
cctggcacagaactcagacccgtggataaaccaccagaagcactcagtctaggaaatgga
gacaatttacaacagatcccaaccagtgaaacaccgtcaccacccccaggcttaacaaaa
cccaatccagtcgtccccattagttcatcgaatcataatgcaaggtctcctttcgagggg
gctgcagcagaatcccagtcactcttttcagacaacagtaacttcagacatcccaatccc
ctcccaaacagcctgctttatcccacttcatcaccatcaacacacgactggccaacagca
ccagagccacagagtctcttcacatcagaaacaatcccagtatcctcatcaacagattgg
caagcggcttttgggtttggctcctccaaacagcaagaggatgacctgggttttgatcca
ttcgacatcaccaggaaagccttagcagacctgatagagaaagaactctcagtccaggac
cagccttccaacacaagcctcacttccctcacctcactacagacccctccgcaaactgca
aacaaaggcattggtggcttcttgaccccctctgctgccacaacagccaactccataggc
aactctttccccaactccatattaccgcggaggttcccagcttttcagcacagagccgtc
tacaactcgttcagttttccgggtcaggcacggtacccatggatggcctatcctcacaat
agcatgatgcacttgaaccacacagcaacacccacctcgaacagtaatttcttggactta
aatataccacctcacagcacaggacttggtggaattcctatatcagacagcagcagtaat
gtggcaagtttaaatgtgaaagagtggcaggatggtctacgggcactgttaccaaatatt
aacatcaattttgggggactaccaaatgctgcttcctgctcttcagtgaaccatgcagca
ccaacctcatccaacagcaccagcctgaactgggagagtgggagtggctggatggaccca
gcaattataacaggtgtcccagcatctacggggaacagtttagatactctgcaggatgaa
aaccctccacattggctgaagtcacttcagacactgacagaaatggacggccccacagca
gcacagacagggcacagtaaccccttcaacacacagatccctttacacagagctggctgg
accccttaccctccaccctccaacccaggcaacttccactctccacctccaggcttccag
agcaccttcagaccccccaacaaaacccccacagatcttctacagagctctacattggat
cgtcactaa
DBGET
integrated database retrieval system
