Rhincodon typus (whale shark): 109932239
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Entry
109932239 CDS
T06055
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109932239 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109932239 (msh2)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109932239 (msh2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
T3SS_needle_reg
Motif
Other DBs
NCBI-GeneID:
109932239
NCBI-ProteinID:
XP_048457093
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All DBs
Position
9:68163060..68309814
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AA seq
934 aa
AA seq
DB search
MAVQPRDRLSGADSGQDGSAFVAFYKSMPEKPDTTFRVFDRNDYYTVHGKDALFAAREVF
KTNGVIKTLGSGNNKIESVVLSKMNFESVVRDLLLVRQYRVEVYRNKAVSKSSKENDWYL
ACKASPGNLTQFEEILFGNSDMSAAAAVVGVKLGTADGQRLVGVGYVDSTLRKLGVCEFP
DNDQFSNLEALLVQIGPKECVLSGGETAGDGTKLRQIVQRGGILITDRKKSEFTNKDIVQ
DLNRLLKGKKGEQVSSAALPEMEKQVAMSSVSAVIKYLELLSDKTNFGQYDLITFDLSQY
MRLDNAAVSALNLFQGASEDPSNTQSLAGLLNKCKTPQGQRLVNQWIKQPLMDKNRIEER
LNLVEAFVEDTELRQNLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRIYQAVIHLPNVVQ
VLDRYEGVHTMLLKAVFISPLTDLISDFGKFQELIETTLDLNQVENHEFLVKPSFDPNLT
ELREKMDNLEKSMQSTLNQAARELGLEAGKTVKLESNTQLGYYFRVTCKEEKALRNNKKF
NTIDIQKNGVRFTNSKLTSYNEDYMKSREEYEEAQNVIVKEIINISAGYVEPQQTLNDVI
AQLDAVVSFAHVSNGAPVPYVRPKILEKGHGRIILKASRHPCIEVQDDMAFIPNDVTFEK
NKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCDSAEISIVDCILARVGAGDSQL
KGVSTFMAEMLETASILRSATEHSLIIIDELGRGTSTYDGFGLAWAISEYISTKICAFCM
FATHFHELTALADQVPTVNNLHVTALTTDETLTMLYRVKKGVCDQSFGIHVAELAQFPKH
VIQSAKDKAMELEEFQNIGNSEDSEEGPAAKKSRQEKQDGERIIAEFLSNIKALPITKMS
EEDIKQELMKLKSEVLAQNNGFINEIISRSTFSV
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccccgggaccggttatccggagcggacagcgggcaagatggtagtgcc
ttcgttgccttctacaagtctatgcccgagaaaccggacactacttttcgtgtctttgac
cgtaatgactactacacagtgcacgggaaggacgcattgttcgccgccagggaggtgttc
aagaccaacggagtgatcaagaccctgggatcgggaaacaataagattgaaagtgttgtg
ttgagtaaaatgaactttgaatctgtggtcagggatcttctgctcgtccgacagtatcgt
gtggaggtttataggaacaaagctgtgagtaagtcctcaaaggagaatgattggtatttg
gcctgcaaggcttctcctggtaacctcactcagtttgaagagattctttttggtaacagt
gatatgtctgctgcagctgcagtggtgggtgttaaactgggcacggcagatgggcagagg
ttagttggtgttggctacgttgactccacgctgcggaagcttggtgtgtgcgagttcccg
gacaatgatcagttttccaatctagaggctctcctggtgcagattgggccaaaggaatgt
gttttatcaggtggcgagactgcaggagatggcactaaacttcgacagattgtacaacga
ggaggcatcttgataacggatagaaagaaaagtgagtttacaaataaggacattgtacag
gatttaaaccgcctgctgaaaggaaagaaaggagaacaagtgtcaagtgctgctttgcca
gagatggaaaaacaggtcgccatgtcttctgtttctgctgtcatcaaatatttggagctt
ttgtctgataaaactaactttggccagtatgacttgattacatttgacctgagccagtat
atgaggctggataatgcagcagtcagtgcactcaatctttttcagggtgcatcagaagat
cccagtaacacacagtcattggccggtttactgaacaaatgtaagacccctcagggacag
cgccttgtcaatcagtggatcaaacaaccactgatggacaagaataggattgaggagaga
ttgaacctggtggaggcttttgtggaggacactgaactacggcagaacttacaggaggat
ctgcttcgacgatttcctgaccttaaccgcttggcaaagaagttccagcgccaggcagca
actctacaggactgctatcggatttatcaggctgtcattcatctcccaaatgtggtgcaa
gtgttggatagatatgaaggagtacacacgatgttattgaaagctgtgtttatctcccca
ttgactgaccttatctctgattttggcaagtttcaggaattgattgagacgacattagac
ctgaatcaagtggaaaaccatgagttcctagtgaagccatcctttgacccaaacctaact
gaactgagagagaagatggataatctggagaaaagtatgcagtcaacactcaaccaagct
gccagggagctaggtcttgaagctggcaagactgtgaaactggagtcaaacactcagttg
ggttattatttccgtgtcacttgcaaggaggaaaaggctcttcgtaacaataagaagttt
aacaccatagatattcagaagaatggagttcgattcactaacagtaagttgacctcctac
aatgaggattacatgaagagtagggaggagtatgaagaagctcagaatgtgattgttaaa
gaaatcatcaatatctcagcaggatatgtggagcctcagcaaactttaaatgatgtgatt
gctcaactggatgcagtggtcagttttgcccatgtatctaatggagccccagtgccatat
gtaaggcctaagatcctggagaagggccacggtcgaattatcttgaaggcttccaggcat
ccatgtatcgaggttcaggatgatatggccttcatacccaatgatgttacctttgagaag
aataaacaaatgttccatataataacaggtccaaacatgggtggtaaatcaacgtatatc
cggcagaccggcgtggtggttctgatggcccagattggttgttttgtaccctgtgactct
gcagaaatcagtattgttgattgcattcttgctcgagttggtgctggtgacagtcagctc
aaaggcgtttcaacctttatggcagaaatgttggagacagcatctattttgagatcagca
actgaacactctctcattatcattgatgaattgggaagaggcacctctacatatgatggc
tttggactggcctgggccatatcagaatacatttccaccaagatttgtgcattttgtatg
tttgccactcatttccatgagttgactgcgctagctgaccaagtaccaacagtcaacaac
ctgcatgtgacggcgctcactacagatgaaacactaaccatgctgtaccgtgtaaagaaa
ggtgtctgtgaccagagttttggtattcatgtagctgagcttgctcagtttcccaaacat
gttattcaaagtgccaaggacaaagccatggagcttgaggagttccaaaacattggaaat
tctgaggattctgaagaagggcctgcagctaagaaatcccgccaagaaaagcaggatggt
gaaaggataattgcagaatttttgtcaaatatcaaagctttacccattactaaaatgtct
gaagaagacattaagcaagaactgatgaagctgaagtctgaagtgctggcacagaataac
ggttttatcaatgaaattatttcgagatctacattctctgtgtag
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