Rhincodon typus (whale shark): 109932255
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Entry
109932255 CDS
T06055
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109932255 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109932255 (pcf11)
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109932255 (pcf11)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109932255 (pcf11)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109932255 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
109932255
NCBI-ProteinID:
XP_020387076
LinkDB
All DBs
Position
6:55444676..55486776
Genome browser
AA seq
1889 aa
AA seq
DB search
MAAEDTAKADACKEYQSSLEDLTFNSKPHINNLTILAEENLKYSPEIVKLIEAQITKAPA
SEKLPVMYLMDSIVKNVGGSYISLFAQNLSLIFSSVFEKVDESTRKSLFKLRSTWDEMFQ
LTKLYALDVKVNKLDPAWPIKPLPPNVNSSSIHVNPKFLNRSLEEPTTSSSTVAPINSAK
QNIAESQKNVTQEQEQFIRQQLLAKQKQLLELQQKKLELELEQTKAQLMASLASQHTIPD
SSVNLGHSKLHVPITKVSPMLSMGTGKPTPATVRPLQQESTELEKLQAPNVSDAKVSNRD
PRINRLSQQSTHSKDPLKKESQLQTEKLEKAGSKKNSPAGGSSERTESQISTSKQEKDKI
CEKLVRKESKSSEGKSKLVSPVKNKLPVKNTKKTDTEKVKVEVSKRDPRLRKSSQDKTDK
VETKEKRTNVEKKEDDQSKGAERKPSAIRNKTINGILLKNEKDGKEIGKDVSKSGGFNFR
SHSRSSRSRSPRSRSPRSRSPISRSPVSRSARQRGRLSPKRRRTSVSPLSKTQDKEKSVK
RPLSDEYKQNANNWERRDVRKKGNTKPEVRDPRKLKRTREDRCQEPQVARPENRNSPRHS
PEPKENVENWHDQPSAKRWKSGWEEAKSLKQKQETPSHGKFPHQQKDVYSGSKGILSPRT
PRQQRMSVDANLQIPKELTSANKRDLLKKANQRLAAGEISYDEFLVVAHQINQLFQYQEE
KSRSSDWQGSHVTPRGFKTELKGESPLARTQGKGTPLSEAEMSYLEHMSKLKRTRVQLEQ
SHEIEPRWKTREAHNKDISGDLSLSIREDGDQGSKSPNMTSTSYSLIERHDTRGTCQERK
LGEKRDASECGRGHYSEGRHSERRKLCDVKPARRSPAGDNRQLHEKHCDHVSPLRQHTTP
VVDEERNQSNVRDSKKHVDEKLPIKQMKSSPIPEERYKIDSNHGKLCNNWIEPRNEHHKD
QRQGSKHQPVVERDLQEFGPRDGQADIKREEPRSICDRHSEERPSYDATQRNSGLVESTR
LRSGALEMPPRFREVADRPGQGKSGSGRNLEKLRTDESIESDRTWLRSRNGSPSCDGCIA
GSRIRLQEPPEQVIQPIDNAPEQPCHWIEGIPRQPNAHFDGPGGSRVGQPGTCFDGPHRG
QPGACFDCPGSLHLGQPGVRFDGPGGPRSVLRFDSSRPRQPGPRFDSPRMGQPGPRFDGP
RPGQPGLRFDGPHPGQPGTRFNGPHPGQPGTCFESPGGHPGQPGIHFDGSHPGQPCGHYD
SPGGHPGQTGTRFGPHTGQPGAQLDNPGNRGHARFDTHPGQPGMHFDGPHPRQPGTRFDS
PDGLGQPCMRFDGPQPGHPSMRFDGPGSRLRQPVTCFDGPHPGQPNTPFDGLGRPTQCAV
RFDGPQMGQAGTHYDSSGSHPGQPAIRFDGPAGTRYDMNSTQPGTYFDNSRGQQFEGASM
HPDPRCSVAGHLFNGHPPSSQYQGRAFDGQPGPRFNVPQGSHYNEPGVHGATTLANPAYG
PTGPCFEGQTAVPRLSGPHNNDQYDSACGTFYNSNLPASLPENMRQLQPGNTMTGFSHNP
IPFSQGQQYITPQSSVPVTQIQQGSSFAPLDNHLGQLDVNELFSKLLSTGILKPNPVDSV
PTQSDVVPEGDSQVQTTIEEDEEEENEENIPDLTGFQIEELKQRYDGVISRLYTGIQCYS
CGMRFTASQTDVYADHLDWHYRMNRMEKDITKKVTYRKWYYSLTDWIEFEEIADLEERAK
SQFFEKVHEEVVQRTQEAAKEKEFQSVPAGPAGVHEVCEICQEAFEQYWDEDEEEWHLKN
AIRVDNRTYHPACYEDYKNASFTDATPSPNEAPVENPLHSVLKQEQLASSNKTSDATNSC
KDTENERSCMLTDDNKTEKDSATVKVETV
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaagatacggccaaggcggacgcctgtaaagaatatcagtcgtcgctcgaa
gacctgactttcaacagcaaaccccacatcaacaacctgaccatcctggccgaagagaac
ctgaagtactcgccggaaatcgtcaagttaatcgaagcacaaataaccaaggccccagct
tcagagaagcttccagtcatgtacctcatggattccattgtgaagaatgttggaggaagc
tatatttcactctttgctcaaaacttaagtcttatattttctagtgtttttgaaaaggtg
gatgagagcactagaaaaagtttgtttaagttgcgttccacatgggatgaaatgtttcaa
ctgacgaaactttatgccttagacgtcaaagtcaacaagctagatcctgcatggcctatt
aagcctttgccaccaaatgtgaatagttcaagcattcatgtaaatcccaagtttttaaat
cgatcgcttgaagaacctaccacctcaagttccacagttgctcctattaactcagctaaa
caaaacattgctgagtcacagaaaaacgtaacacaggagcaagagcagtttataagacaa
cagctgttagcaaaacaaaaacagttacttgagttgcaacagaagaagttggaactggaa
ttagagcagacaaaggcacaactgatggcctcacttgcttcacaacatactattcctgat
tcatcagtgaaccttggacattccaaattacacgtgccaatcacaaaggtttctcctatg
ctttcaatgggaacaggaaagccgactccagctacagttagacccttgcagcaggaatca
actgagttagaaaaacttcaggcaccaaatgtcagtgatgccaaagtatcaaacagagac
cctcggataaataggctaagtcaacagtcaactcattcaaaagatcctcttaaaaaagaa
agccaactgcaaactgagaaattagagaaagcaggaagcaaaaaaaatagcccagctggg
ggatcttctgaaaggacagaaagtcaaattagtacatcaaaacaagaaaaagataaaatc
tgtgagaagttagtaagaaaggaatccaaaagttcggaaggaaaatctaaattggtatcg
ccagtgaaaaataagttgcctgttaaaaataccaaaaaaacagatactgagaaggtaaaa
gtggaagtcagtaaaagagatccaagattgcgcaagtcttctcaagacaagactgataaa
gtagaaacaaaagagaagaggacaaatgttgaaaaaaaagaggacgatcaaagcaaagga
gctgaacgtaagccttcagccataagaaataaaacaattaatgggattctgttgaaaaat
gaaaaggatggaaaagaaattggaaaggatgtttctaaatctggagggttcaattttaga
tcacattctagatcttcacgatctcgctccccacgatctcgctccccacgatctcgctca
ccaatatcgcgatcacctgtgtcacgttctgccagacaaagagggcgattgtcaccaaag
aggcggcgtacaagtgtttcaccactttctaaaacgcaggacaaagaaaagtctgtaaag
agacccctttctgatgagtataaacagaatgccaataactgggaacgtcgagatgttaga
aagaaaggcaataccaaaccagaagtaagagacccaaggaaactgaagagaacacgggag
gatagatgtcaagagccacaggttgcaagacctgaaaaccgaaattctccaagacactcc
cctgagccaaaggaaaatgtagaaaattggcatgaccagccatctgcaaaaaggtggaag
tctgggtgggaggaagctaaaagcttgaaacagaaacaagaaaccccttcacatggaaag
tttcctcatcaacagaaggatgtatattctgggagtaaaggtattctgtcacctcgaaca
cctagacagcaaaggatgagtgttgatgcaaatttacaaatccccaaagaattgacatct
gctaacaagagagatttattgaaaaaagcaaatcaacgactggcagctggagaaataagt
tatgatgaatttcttgttgttgctcatcaaatcaatcagctgttccagtatcaagaagaa
aagagtagatctagtgactggcaaggatctcatgttacccccaggggttttaaaactgaa
ctgaagggagaatctccattagctagaacccaaggtaaaggtacaccattatctgaagca
gaaatgagctatcttgaacacatgtctaaattaaaaagaaccagagttcagttagaacaa
tcacatgaaatagaacctcgttggaaaacaagagaggctcataataaagatatatcaggt
gatctctcgcttagtataagagaagatggtgaccagggcagtaagtctcccaatatgacc
agcacttcatattcattaattgaaaggcatgatacaagaggtacttgtcaggaaaggaaa
cttggagagaaaagagacgcaagtgagtgtggacgtggacattacagtgaaggaaggcat
tcggaaagaagaaaattgtgtgatgtcaagcctgcaagacgatctcctgctggtgataat
agacagttgcatgagaaacattgtgatcatgtatcaccacttcgtcaacatacgactcct
gtagtagatgaggagagaaaccaaagtaacgtacgggatagcaaaaagcatgtagatgag
aagctgccaattaaacaaatgaaaagttctccaattcctgaagaaagatacaaaatagat
tctaatcatggcaagttatgtaacaactggatagaacccaggaatgaacaccataaagat
cagcggcagggctcgaaacatcagcctgtggttgaaagagaccttcaggagtttggtcca
agagatggccaagcagatataaaaagagaagaaccaagatctatttgtgaccgtcattca
gaggaaaggccttcttatgatgcaacccagagaaacagtggactagttgaaagcacaagg
ttaagatctggggcacttgaaatgcctccaagatttagagaagttgccgatagaccggga
caaggaaaatctggttctggaagaaacctagaaaaattgagaactgacgaatcaattgaa
tcggataggacatggctccgtagtagaaatggatctccaagttgtgatggttgcattgct
ggatctagaataaggttgcaggaaccccctgaacaggttatacaaccaattgataatgcc
cctgaacaaccatgtcattggattgaaggtattcctagacaacccaatgcacacttcgat
ggtccaggtggttcccgtgttggacagcctggtacatgctttgatggtccacacagagga
cagcctggtgcatgctttgattgcccaggcagtttacatttaggacagcctggtgtacgg
tttgatggtccaggtggccctcgttctgtgttgcgctttgacagttctcgccctagacag
cccgggccacgttttgatagtcctcgtatggggcagcctgggccacgttttgatggtcct
cgcccaggacagcctggactgcgctttgatggcccacacccaggacaacctgggacacgc
tttaatggtccacacccaggacagcctggtacgtgttttgagagtccaggtggtcaccct
ggacagcctgggatacactttgatggttcacaccctgggcaaccgtgtggtcactatgac
agtccaggtggccacccaggtcaaactggcacacgctttggcccacacacaggtcagcca
ggcgcacaattagataatcctggaaatcgagggcatgctcgctttgatacacaccctggg
caacctggtatgcactttgatggcccacatcctcgacagcctggtacacgctttgatagt
ccagacggtttaggtcagccctgtatgagatttgatggtccccaacccggacatcccagt
atgcgctttgatggcccaggttctcgtctgaggcagccagtcacatgttttgatggtcca
catcctggccagcccaatacaccctttgatggtcttggtcgtccaacacaatgtgcagtg
cgatttgatggcccacagatgggccaggctggcacacattatgacagttcgggtagtcac
ccagggcaacctgccattcgttttgatggccctgctggaactcgttatgacatgaattct
acacaacctgggacatactttgataattctcgtgggcaacagtttgaaggggcttccatg
catcctgatcctagatgcagtgttgctggtcacttgtttaatggtcatccaccaagttca
cagtatcagggaagagcatttgatggacagcctggacccagatttaatgtccctcaagga
tctcattataatgaacctggtgtacatggagcaacaacattggctaacccagcctatggg
ccgacgggtccttgttttgaaggtcagacagcagtgcctcggttgtcaggaccccataat
aatgaccaatatgattcagcatgtggaacattttacaacagtaaccttcctgcatcatta
cctgaaaatatgcgtcaattgcagcctggtaataccatgactggtttttctcacaatcca
attccttttagtcaaggccagcagtatataaccccccagtcttctgttccggttacacag
attcagcaaggatcgtcttttgcacctctggataatcatttggggcagttggacgttaat
gaactgttttcaaagctgctttcaactggaattctaaagccaaatccagtagactctgtt
ccgacacagtctgatgtggttccagagggtgattctcaggttcaaacaacaattgaagaa
gatgaggaagaagaaaatgaggaaaacattccagatcttactggctttcaaattgaggaa
ttgaaacagagatatgatggtgttatcagtcgactatacacagggattcagtgttactcc
tgtggaatgaggttcacagcgtctcaaactgatgtttatgcggaccatttagactggcat
tatcgtatgaacagaatggaaaaggacatcactaagaaagtgacttacagaaagtggtac
tacagtttaactgattggatagaatttgaagaaattgctgacttggaagaacgtgcaaag
agtcagttctttgagaaggtccatgaagaagttgtgcagagaacacaagaagcagccaag
gaaaaggaatttcagagtgttcctgctgggcctgctggagtacatgaagtgtgtgaaatt
tgtcaagaagcttttgagcagtattgggatgaagatgaagaggagtggcatctgaaaaat
gcaattcgtgtggataatagaacgtatcatccagcatgttacgaagattacaaaaatgct
tcatttactgatgcaacaccatctccaaatgaagctcctgtagaaaatccactacattca
gttcttaaacaggaacagttggctagtagtaacaagacttcagatgccaccaacagctgt
aaagatactgagaatgaacggagctgtatgttgacagatgataataaaactgaaaaagat
agtgcaactgtgaaagtggaaacagtctag
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integrated database retrieval system
