Rhincodon typus (whale shark): 109932273
Help
Entry
109932273 CDS
T06055
Symbol
myo5b
Name
(RefSeq) unconventional myosin-Vb isoform X1
KO
K10357
myosin V
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
109932273 (myo5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109932273 (myo5b)
04131 Membrane trafficking [BR:
rtp04131
]
109932273 (myo5b)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109932273 (myo5b)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rtp04812
]
109932273 (myo5b)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
109932273 (myo5b)
mRNA cycle factors
P-body specific factors
109932273 (myo5b)
Membrane trafficking [BR:
rtp04131
]
Others
Actin-binding proteins
Myosins
109932273 (myo5b)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
109932273 (myo5b)
Cytoskeleton proteins [BR:
rtp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
109932273 (myo5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
Myo5a
DIL
IQ
Myosin_N
AAA_16
AAA_22
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
109932273
NCBI-ProteinID:
XP_048455518
LinkDB
All DBs
Position
1:complement(30120106..30359855)
Genome browser
AA seq
1833 aa
AA seq
DB search
MSASELYSKYTKIWIPDPEDVWKSAEITKDYKDGDELLHLKLEDEMPFEYSIDSNAERLP
FLRNPDILVGENDLTALSYLHEPAVLHNLKVRFLESNAIYTYCGIVLVAINPYEQLPIYG
EDVIHAYSGQNMGDMDPHIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYAMRYF
ATVGGSASEANVEDKVLASSPIMEAIGNAKTTRNDNSSRFGKYIQIGFDRQYYIIGANMR
TYLLEKSRVVFQAEDERNYHIFYQLCASANRPDFKELNLSSAEDYFYATQGGNTEIDGVN
DAEDFEKTWNAFTLLGVKDAHQMNIYRVIASILHLGNVEIVSERDVDTCGIARNDEHLNY
FCDLLGIEHDQTEHWLCHRKLVTTSETYVKTMSKQHAINARNALAKHIYAQLFNWIVDHI
NKALYTTSKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMK
EQIPWTLIDFSDNQPCIDLIEAKLGILDLLDEECKMPKGTDQSWAQKLYDRHSSSLHFQK
PRMSNMAFVVIHFADKVEYQCDGFLEKNRDTVHEEQINILKASKYQLVADLFQEEKEPAT
SNTKAKTSKINVRPLKPAMKAPNKEHKKTVGHQFRNSLQLLMETLNATTPHYVRCIKPND
EKSAFSFDPKRAVQQLRACGVLETIRISAAGYPSRWTYHEFFDRYRVLMTKKNILNDKKE
TCKKLLEIVIKDPDKFQFGRSKIFFRAGQVAYLEKLRADKFRAACMMIQKTVRGWLQRIK
YRRMKKAAITIQKHVRGYQARRLVDLLRKTRAAVIFQKQYRMLVVRRKYLHIRNAAITIQ
AYTRGRFVRQVYHELLRQHKARIIQKCVRGWIARKRFSRIRNAVIYLQCCYRRMKARREL
KTLKIEARSVEHYKKLTSGMENKVVQLQRKVDVQNKEHKAMTEQMMTVTTAQATEINRLN
KELDRWREQQGDKSRETSLQEEIEKLREELGKSQTERKILEDTYTREKAELQQRVLDLEK
ENTLLKDEKDKLNQSIKNESKDVAEKLSRKTAKESERAKELEEERSRYQNLLKEYSRLEQ
RYDNLQEEINLIKHTPGHRRNPSNQSSLGSDSNYPSISTSEAGDTEDAVQLVEEAGLENA
AMDMTIFLKLQKRVRELEQERKLLRAEIERKEAAEAEKANEYNSIPENEQAADLAYNSLK
VLEFAGVEDTVDQAMRQELESENKKLKNELNELRKAIAEKATGENSTNDVDNAYSVLLDQ
LRVANEELEVRKEEVLLLRTQIVDAARQKEVVGSMANLTEKYEWKRSDENTEKDDVIEAY
NGICETNRLLEAQLQSQVRQHEEEVGRMQTQIEVLKEDLEKQQQVITQTLQMSPEARIEY
NVQQEITRLTNENLDLKELVEKQEKNEKKLKKQLKIHMKKVQELEARNLVQKESRPELTR
QVTVQRKEKEFQGMLEYHKDDESQLIRNLITDLKPQAVSATVPGLPAYILFMCLRHADYI
NDDQKVHSLLSSTINGIKKVLKKHNDDFEITSFWLSNSCRLLHCLKQYSGDEDFMKQNNT
RQNEHSLKNFDLAEYRQLLSDLSIQIYQQLIKIAESLLQTMIVSAMLENESIQGLSSVKP
MGYRKRSSSRVDGDSSYTLEAMVRQLNLLNNTMCEHGLDPEIIQQVFRQLFYIINAVTLN
NLLLRKDVCSWSTGMQLRYNISQLEEWLRGKNLHQSGTMKTMEPLIQAAQLLQVKKKTSD
DAAAICSMCTDLTPQQIVKILNLYTPVNEFEERVTVAFIRNIQSCLQDRSEPPQLLMDFK
HMFPVIFPYNPSALNLDTIHIPANLNLTFLNRV
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcctcggaactttacagcaagtacacgaagatttggatccctgatccagaggat
gtttggaaatcagcagaaatcaccaaggattacaaagatggtgatgagctcctacatctt
aaactggaagatgaaatgccatttgagtattccatcgactcaaatgcagagcggttacct
ttcctgcgcaatccagatatactggttggcgagaatgacctgacagctctcagttacctt
catgaacctgcagtactccataacctaaaggtccgatttctggagtccaatgccatatat
acgtattgtggtattgtcctagttgctatcaatccttatgaacagttgccaatttatgga
gaagatgtcattcatgcatatagtggacagaacatgggggacatggatcctcatatcttt
gcagtcgctgaggaagcctacaaacaaatggcaagagatgagaagaatcaatctattatt
gtaagtggggagtctggagctggaaaaacagtgtctgctaagtatgccatgcgctatttt
gctaccgttggtggatcagccagtgaagcaaatgttgaagacaaggtactggcttcaagt
ccaattatggaggccattggtaatgctaaaacaacaaggaatgataacagcagccgcttt
ggaaaatacatccaaattggttttgaccgacaatattacataattggtgccaatatgcga
acctatctgctagaaaagtccagagtggttttccaggcagaagatgagcgtaactaccat
atcttctaccaattgtgtgcctcggccaatcgacctgatttcaaagaactgaacctaagc
agtgcagaagactatttttatgccacacagggcggtaacacagaaatagacggagttaat
gatgctgaggattttgagaagacatggaatgctttcacattacttggtgtaaaggatgca
caccagatgaacatttacagagtaattgcttcaattctgcacctgggaaatgtcgaaata
gtgtcagaaagagatgtcgacacttgtggtattgctagaaacgatgagcacttgaactat
ttctgtgatttgctgggaatagagcacgatcaaacggagcactggctgtgtcaccgcaag
cttgtcacgacctcggagacttatgtcaaaactatgtccaagcagcatgccatcaatgcc
agaaatgccctggccaagcatatctacgcccaactcttcaactggattgtggatcacatc
aataaagcgctgtacacaaccagcaaacagcactcgttcattggagtattggatatttac
gggtttgaaacatttgaaattaatagttttgaacagttttgcatcaattatgccaatgaa
aaattgcagcagcaatttaacctgcacgtcttcaaactggaacaggaggaatatatgaag
gagcaaataccatggactctcattgacttctctgacaaccagccatgcattgatcttatt
gaggcaaaattgggtattttagatctgctggatgaggaatgcaagatgccaaaagggaca
gaccagagctgggcccagaagctctatgaccgccattcaagcagtctgcactttcagaag
ccccggatgtccaacatggcctttgttgttatacattttgctgataaggtggagtatcag
tgtgatggcttcctggagaaaaaccgcgacacagtacatgaagaacagatcaacatactg
aaggccagtaagtatcagctagtagctgacctcttccaggaagagaaggaacctgctact
tccaacacgaaggcaaaaacttctaaaataaatgttcgacctctcaaacctgccatgaaa
gcacccaataaagagcacaagaaaacagttggacatcagtttcggaactctttgcaatta
ctcatggaaaccctgaatgcgacaacaccacactatgtacgctgcatcaagccaaatgat
gagaaatctgcattctcgtttgatcccaagcgtgctgtacagcaacttcgggcctgtggt
gtgttagagactattcgtatcagtgctgcgggttacccatcaaggtggacgtaccatgaa
ttcttcgaccgatatagagtcctaatgaccaagaagaatatattaaacgataagaaagag
acttgtaagaaacttcttgaaatcgttatcaaggatcctgataaattccagtttggccga
tccaaaatcttcttccgtgctggtcaggtggcatatttggagaaactgcgagcagataag
ttccgagctgcatgtatgatgatacagaagactgttcgcggttggttacagagaattaag
tatagacggatgaagaaggccgccatcactattcagaaacatgttcggggctatcaagct
cgcagattggtggatttgttgcgaaaaacaagagctgcagtcatttttcagaagcagtat
aggatgcttgttgtgcgacgaaagtatctgcatatccgcaatgcagccatcacaattcag
gcttacactcgtggaaggtttgtcaggcaggtgtaccatgagttgctacggcaacacaaa
gccagaattatccagaagtgcgtaaggggctggatagcccgaaagaggttctccaggata
cgcaatgcggtcatctatctccagtgctgctataggcgcatgaaggcacgccgtgagtta
aagacattgaagattgaagcacggtcagtagaacactacaagaagctcaccagtgggatg
gaaaataaagtggttcagcttcaaagaaaggtagatgttcagaataaggagcacaaggca
atgactgagcagatgatgacagtgaccaccgcacaagctactgaaatcaacagactgaac
aaggagttggaccgatggcgtgaacagcaaggtgacaagagccgagaaactagtttacaa
gaggaaattgagaaactccgtgaggagcttgggaaatcccagactgaacgcaaaatcctg
gaagacacttacaccagagaaaaagcagaacttcagcagcgtgtactagatttggagaaa
gagaacacactgctgaaggatgagaaagacaaactaaaccagagcatcaagaatgagtcg
aaggatgtcgcagaaaaactctctcggaagacagcaaaggaaagtgagcgggcaaaggag
ctggaagaagagcggtctcgttatcaaaacctcctgaaagagtattcccgtctggagcag
cgctacgataatctgcaggaggaaataaatctaattaagcacactccaggccacaggaga
aatccatccaatcaaagcagtcttggatctgattctaactacccttccatttctacatct
gaggctggggatacagaggatgcagtgcagctggtggaggaagctggcttggagaatgct
gccatggacatgactatattcttgaaactacagaaacgagtgcgggaactggagcaggaa
agaaagttgctgcgtgcagagattgagcgaaaagaagcagcagaagcagaaaaggcgaac
gaatacaatagcatcccggagaatgagcaagcagcagatttggcttacaacagtttaaag
gtcttagagtttgcgggtgtggaagatactgtcgatcaagccatgcgacaagagctagaa
tctgaaaacaagaagctgaaaaatgaacttaatgagctaagaaaagccattgcagagaag
gcaaccggggagaattcaacaaacgatgtggataatgcatacagtgtactgctagatcag
ctgagggtggccaatgaagagctggaggtgcgcaaggaggaagttctcttgctgagaact
caaattgttgatgctgctcgtcagaaggaagtggtgggaagcatggctaatttgactgag
aagtatgagtggaaaagaagtgatgaaaacactgagaaagatgatgtcattgaggcttac
aatggtatatgtgaaaccaataggctgctggaggcacagttgcagtctcaggtgaggcaa
catgaggaagaggtgggaagaatgcagactcagattgaggttctgaaggaggatttggaa
aagcaacagcaggtcatcacacagacactccagatgtctccagaagcacgcattgagtat
aatgtgcaacaggagatcacacgcctcaccaatgagaatctggaccttaaagaactagta
gagaaacaggaaaagaatgagaagaagctgaagaagcaactcaagatccacatgaagaaa
gttcaagagcttgaagcaaggaacttagtgcagaaggaatcaagacctgagctaaccaga
caggtcactgtgcaacggaaagagaaggagttccagggaatgttggaataccacaaggac
gatgaatcccagcttattcgcaacctcatcacagacctgaagcctcaagcagtatctgcc
actgtgccaggtctgcctgcatacatcctttttatgtgccttagacatgcagattacatc
aatgatgaccagaaggttcactcactcctctccagtaccatcaatggcatcaagaaagtg
ttaaagaaacataatgatgactttgaaataacgtcattttggttgtccaacagttgtcgc
cttctacactgtttaaaacaatacagtggagatgaagattttatgaagcagaataataca
cgtcagaatgagcacagcctcaagaactttgacctcgcagagtatcgtcagcttctaagt
gatctctctattcagatctatcaacaactgattaagattgcagaaagtcttcttcaaacc
atgatagtatctgcaatgttggaaaatgagagcattcagggtctgtccagtgtgaaaccc
atgggctaccggaaacgttcttccagccgggtggatggagacagcagctatactctagag
gccatggtacgccagcttaacctgttgaacaacaccatgtgtgagcatggactagatcct
gagattatccagcaggtctttcggcaacttttctacattatcaatgctgttacacttaac
aatctgctcctgaggaaggatgtgtgctcgtggagtactggaatgcagctcaggtacaac
atcagtcagttagaagagtggctccgaggaaaaaatttacatcagagtgggaccatgaag
acgatggagcctctaatccaggcagctcagctgcttcaagtaaaaaagaaaacaagtgat
gacgctgcggccatctgttcaatgtgtacagatcttaccccacagcagattgtcaagatt
ttaaacctttacacaccagtgaatgaatttgaagaacgtgtgacagtagccttcattaga
aatattcagtcctgtttacaagaccgcagtgaacctcctcaacttttaatggacttcaaa
cacatgtttcctgtaatctttccatacaacccttctgcactcaacctggataccattcac
atcccagcaaatttgaacttaactttcctcaacagagtatag
DBGET
integrated database retrieval system
