KEGG   Rhincodon typus (whale shark): 109932334
Entry
109932334         CDS       T06055                                 
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
  KO
K19672  intraflagellar transport protein 140
Organism
rtp  Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:rtp03037]
    109932334 (ift140)
Cilium and associated proteins [BR:rtp03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   109932334 (ift140)
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd TPR_IF140_C WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WD40_Prp19 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_EML TPR_COPA_B Beta-prop_RIG_2nd Clathrin TPR_14 ANAPC4_WD40 Beta-prop_HPS5 Vps16_C TPR_IFT80_172 TPR_GEMI5 Beta-prop_WDR35_TULP_N PEP5_VPS11_N Beta-prop_CAF1B_HIR1 tRNA_int_end_N2 WD40 FtsK_SpoIIIE_N
Other DBs
NCBI-GeneID: 109932334
NCBI-ProteinID: XP_048465507
LinkDB
Position
21:35407159..35531400
AA seq 1471 aa
MAVYFDHHIEAPENVGSPSQIAWHHIHPLLAVASVSTSCIPGGSVDVYLEQGEHIPNSHI
ERPFQPALISWHPSKKVVATGWETGAVIFWSEQGVDEQQIAAGTHRAQITILEWGSNGTR
LVSADKAGVLMVWRVDQHGRIQGLPLGKQDYGKQLTHCIFKPPAPGEDLVQLAKAAVSGD
ENALDMFNWRKVGKGDAPFKVGLQQGITCFVSATDGTVYYVGEKGKSLQVLRTDRPIRKL
MYMEGKEILMVVTEALFLSQHSIALDGTSQELMKVKLSGKAGQKADIIWAESGLLITATG
EIVIRLWDLDKDENYTLTLDEHLGFSTGEIINCISYSESKGIIAAGTRNGQIALWRKTLV
NRSNGCRIEGKDQWKLQAPIDLEGNITQIKWGSSKNLLSVNSAGTVLILSEQVMSAHFNQ
QVAAIQVAPNQLSLTFFSSENQQMLRTDMHVKGVYVTKEIVAVWNGKHATVFETFGPSLR
NAGSFPCDSSVLAVLEESIYTVEPNRVQVRTLQGTVKQLLVFNETEGNPCHLNICGNFLV
VGTDTAHVKVFDLSRREAKPHCNAKNLAEHVPNLGSVASVKCSSNGNNVSILINRVNGTP
DSRVFFYDVEMDTLNYFDFETGRPSSEICSVPRVEESDTEKGHSEMSELLGRYPISHFWD
QNEPKLFVCEALLAISTSKQSKLHAAPETNCPEYKVEAMVVSFFITQEHGLLLQDSFPKM
VSHEALLGLEVPYYYFSKKSGETMNETESKPGSPMSPQMVARRPLRDFVGLEDCDKTTRD
AMLNFSFYLTIGDMDEAFKSIKLIKSEAVWENMARMCVKTRRLDVAKVCLGNMGHARGAR
ALREAEQEPELDARVAMLAIQLGMLEDAERLYRNCRRYDLLTKFYQASGQWQKAIENAEG
FDRVHLRTTYYNYAKHLEALGDHHLALIHYEKSDTHRFEVPRMLLEDLQALELYINKTKD
KSLWKWWAQYLESQADMDSALKYYEKAQDYLSLVRVHCYLGNIQKASEIANETGNHAASY
HLARQYEARDNVKQAIHFYTRAQAYNNAIRLCKDSGLDDHLMNLSLLSSPEDMMEAARYY
EEKGLQMDRAVMLYHKAGHFSKAIELAFATQQFNALQHIAEELDENSDPALLSRCSDFFI
EHKQFEKAVELLVTAKKYYEALHLCLEQNLTITEDMAEKMTVSKGSKELSEDFRRDLLER
IADCCMRQGNYHLATKKYTQAGNKTKAMRALLKSGDTEKIVFFTGVSRQKEIYIMAANYL
QSLDWRKDPEIMKNIISFYTKGRALDLLAGFYDACAQVEIDEYQNYEKALGALTEAYKCL
SKAKMRSQGELEERLGQLQNKLTMVKKFVQIRRLYEEDRKEALKQCENLLGEPELDQTVR
TGDVYALLVEHHAQQGSFEVAYKYMEEMTKKLPSVNVSYYINQQITDAVYKAVGVPIKAN
MVVESVRHNSAEDGEEVEEDVAEESYNGPED
NT seq 4416 nt   +upstreamnt  +downstreamnt
atggcagtttactttgatcatcatattgaagcacctgagaatgtcggttctccatcacag
attgcttggcatcatatccacccattattggcagtggcctctgtaagcaccagttgcatt
ccagggggcagtgtcgatgtgtatcttgagcagggagaacacattcctaattcacacatt
gagcgtcccttccagccagctcttatcagttggcatccttccaagaaggttgtagcgact
ggatgggaaactggagcagtgatattttggtctgaacagggtgtggatgaacaacaaata
gcagctggcacacatcgagctcagatcaccatcttggagtggggcagcaatggcacacgc
ctggtctctgctgataaggctggagttctgatggtgtggcgtgtggatcagcatggacgc
atacaaggattaccacttggtaaacaggattatggcaagcagctgacacactgtatcttc
aaacctcctgctccaggagaagacctcgtacaattggctaaagctgcagtaagtggggat
gaaaatgctttggatatgttcaactggagaaaggttggaaagggagacgcaccatttaaa
gttggacttcagcaaggaatcacatgttttgtcagtgcaacagatgggactgtctactac
gttggtgagaaagggaagagtttacaggtcctccgtactgataggccaatcaggaagctc
atgtacatggaagggaaggaaatcctgatggttgtgactgaagcacttttcctatctcag
catagtattgctcttgatggaacaagtcaagagcttatgaaggtaaagctgagtggaaag
gcaggccaaaaagctgatataatctgggcagagagtggccttctcattacagcaacaggc
gagatagttattagactctgggatttagataaagatgagaattacactttgacactagat
gaacatctggggtttagcactggagaaatcataaattgcatctcatacagtgaaagtaaa
ggtatcatagcagctggcaccaggaatggacagattgctttgtggcgaaaaacactggtc
aacaggtcgaatggttgcagaatagaagggaaagatcaatggaaattacaagccccaatt
gatctcgaaggaaatatcacacagatcaagtggggctccagtaagaaccttctgtctgtg
aatagtgctggaactgtacttatcctcagtgagcaggtgatgtctgctcatttcaaccaa
caagtagcggccattcaagttgctcccaaccaactgagcctcaccttcttctcctctgaa
aaccaacagatgctacgtacagacatgcatgttaaaggagtttatgtcaccaaggagata
gttgcagtatggaacggaaaacatgctactgtttttgaaacatttggaccatcactgaga
aatgcaggctcgtttccctgtgattcttctgttttggctgttcttgaagagagcatttac
actgtggagccaaaccgagtgcaggtacgcactctacagggtacggtcaagcagctgctc
gtgttcaatgagacggagggaaacccctgtcacctaaacatctgtgggaactttcttgta
gtgggaacagacacagcacatgtgaaagtcttcgatctttcccgcagggaagcaaagcca
cactgtaatgctaaaaacttggcagagcatgtaccaaatctggggagtgttgcatctgtg
aaatgcagctccaatggtaataacgtcagcattctcatcaatagggtgaatggcacccca
gattccagggtattcttctatgatgtggagatggacactctgaattactttgactttgaa
accgggcgaccaagcagtgaaatctgttctgttcctcgtgtggaagaaagtgacacggaa
aaggggcattctgaaatgagtgaactgctcggacgatatccaatcagccatttctgggac
cagaatgaacctaaactatttgtgtgtgaagcacttctggctatttcaacctcaaaacag
tcaaaactgcatgcagcccctgagaccaattgcccagagtacaaggtggaggctatggtg
gtatcattcttcatcacacaggaacatggtctgttgctgcaggacagtttccccaagatg
gtgtcccatgaagccctgctggggctagaggtgccctattattacttctccaagaagtcg
ggggagaccatgaatgaaactgaatcaaagccaggctctcctatgagtccacaaatggtg
gccaggaggcccctgcgagactttgttgggctggaggactgtgacaagacgacacgtgat
gccatgctaaatttcagcttttatttgacaataggagacatggacgaggcttttaaatca
attaaactcatcaagagtgaggctgtgtgggagaatatggcaaggatgtgtgtgaagaca
cggcgattagatgtggccaaggtgtgtctggggaatatgggccatgccaggggagccaga
gctctgcgagaagctgaacaggagccagaactggatgcaagagtggccatgctggcaata
cagttgggaatgctggaagatgcagagagactttatagaaactgtaggcggtatgacctc
cttaccaagttttaccaggcctcaggacagtggcagaaggccattgaaaatgctgagggg
tttgatcgagtccatttaagaacaacatactacaattatgcaaaacacttggaagctcta
ggggatcatcacctcgcactcatccactacgaaaaatcagacactcaccgatttgaggta
ccacggatgctactggaagatctccaagcacttgaactatatatcaacaaaacaaaggac
aaaagcctgtggaaatggtgggcccagtatttggaaagtcaggcagacatggactctgct
ttgaaatattatgagaaggcgcaagactatctctcacttgtccgtgttcattgttatctt
ggcaatatacagaaggcctctgaaattgctaatgaaacaggaaatcatgcagcctcgtat
cacctggctcggcagtatgaggctcgggacaatgttaaacaggccatccacttctacacc
cgcgctcaggcctacaacaatgcaatccgcctctgtaaggacagtggtcttgatgatcat
ctgatgaacttgtctctcctgagctccccagaggatatgatggaggctgcacgttactat
gaggagaaggggctccaaatggatcgtgctgtgatgctgtatcataaggctggtcacttt
tccaaagctattgaattggcctttgctacccagcagtttaacgctttacaacacattgct
gaggagctggatgagaattcagaccctgccctgctgtctcgctgttctgatttcttcatt
gagcacaagcagttcgaaaaagcagtggaactgcttgttactgcaaagaagtactatgag
gccctccacctgtgcttggagcagaacctgacaatcactgaggatatggcggagaaaatg
actgtgtctaagggttcgaaggaactctccgaggatttccgccgtgacctgcttgaacgt
attgctgactgctgcatgcggcagggaaactaccacctcgcgaccaaaaaatacacacag
gctggcaacaagaccaaggcaatgagagcacttctgaaatcaggagacacagaaaagatc
gttttctttacaggagtttctcgacaaaaggagatttacatcatggcagcaaactacctt
cagtctttggactggcgaaaagatccagaaattatgaaaaatatcatcagcttctacact
aagggacgagcgctggatttgcttgctggcttttatgatgcctgtgcacaggttgagatt
gatgaataccagaactatgagaaagcattaggagctctgactgaggcatataaatgtttg
tccaaagccaagatgaggagtcaaggtgaactggaggaacggctgggacagctgcagaac
aagctaacaatggtgaagaagtttgtgcagatccgaaggctgtatgaagaggatcgaaag
gaggctttaaaacagtgcgagaatctgctgggtgagcctgaattggaccagactgttcga
actggcgatgtctatgcgctcctggtggaacatcatgcccaacaggggagctttgaggtg
gcctacaagtacatggaagagatgactaagaaattgccttctgtcaatgtgagctactac
atcaaccagcaaattactgacgctgtttataaggcagtgggtgttccaataaaggccaac
atggtagtggagagtgttcgtcacaacagtgcagaggatggagaggaagtggaagaagat
gtagctgaggagtcttacaatggtcctgaggactga

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