Rhincodon typus (whale shark): 109933127
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Entry
109933127 CDS
T06055
Symbol
nup88
Name
(RefSeq) nucleoporin 88
KO
K14318
nuclear pore complex protein Nup88
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109933127 (nup88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109933127 (nup88)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109933127 (nup88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
STX6_10_61_N
DUF7774
Motif
Other DBs
NCBI-GeneID:
109933127
NCBI-ProteinID:
XP_048468787
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All DBs
Position
26:complement(44536054..44612261)
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AA seq
548 aa
AA seq
DB search
MLTSDNSIRFYDLKQPQTPVKTFSLTQCEEENILPASRSYTASLGEIAVAFDFGPLTSAP
GRRSKEEVQVYPLYILYENGETFLIYCNLTHNSAGLIGKLLGPLPMHPAAEDNYGYDACA
ILCLPCTPNILVIATQSGMLYHCVVLEGDEEEDQVSNESWDLRCESLPSLYVFECVELEL
SLKLVTGDDIEQMQSDFSCPIRLHKDPLCPTRYHCTHLAGVHSIGLTWVNELENFFSADD
EDKSALQELVAEQKCLVEHVLCTKPLPCSPPAPVKGFWIISDLSLGAAMICITDSFECII
RELLTTTRPVSPPLLCSNPENSCVASPLRNLASSSFEQHIRNILRRSTTNPLLLRSSDAI
GAPPPQECLQLLSRATQVFREEYILKQALAREEITRRVKLLESQKKKQMQDIVHCIGDKK
AMREMAEILADKFEDARDNQEDIMIRVKRILHSLNSKLPVLSDSEKDMKKELKSISEQLE
DLGNGVKQVHMKSAYQQREIHEQDSPRKKSISLSVSQKKCIQSVLKEQSERITEMVRKIN
DIRTHVNF
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgttgacctctgataattctataaggttctatgatttaaagcagccacagactccagta
aagacattcagccttactcagtgtgaagaggaaaatattctaccagcatcacgatcatat
acagcgtcacttggggaaattgcagttgcttttgattttggtcctttgacatccgctcct
gggcgtcgttccaaagaagaggttcaggtgtatccactttacattctgtatgaaaatggc
gagaccttcttgatatattgcaacctcactcacaacagcgctggtcttattgggaagtta
ttgggtcctctgccaatgcacccagctgctgaggataattacggctatgatgcttgtgcc
atactgtgccttccctgtacccccaacattctggttattgctacacaatccggcatgtta
taccactgtgtggttcttgagggggatgaagaggaggatcaggtgtccaatgaatcttgg
gacctgagatgcgaatctcttccttcactgtacgtgtttgaatgcgtggaattagaattg
agcttgaagctggtaacaggggatgatattgagcaaatgcaatctgacttctcatgtcca
atcagattgcataaagatccattgtgtccaacacggtatcattgcacacatctagctggt
gtgcatagcattgggctgacatgggtcaacgaactggaaaatttcttcagcgcagatgat
gaagataaaagcgcacttcaggagttggtagcagagcagaaatgcttagtagaacatgtc
ctgtgcaccaaaccactgccatgcagtccacctgcaccagtcaaaggattctggatcatt
tcagatctgtccctaggagccgcaatgatttgtattactgattcttttgaatgtattatt
agagaattgctgaccactacaaggccagtgtcaccgccattattgtgttccaacccagaa
aacagctgcgtggcatctccactgcgaaacttagcaagcagttcctttgagcaacacatt
agaaacattttgcgtcgtagtacaactaatccattgctactgaggtcatcagatgcgata
ggagctcctccgccacaggaatgtctgcagctgttgagtcgagccacccaggtcttcaga
gaagagtacatccttaaacaggctcttgcacgtgaagagatcacacgcagggtaaagcta
ctggaaagccagaagaagaagcaaatgcaggatattgtgcactgtattggggacaagaag
gccatgcgggaaatggcagagatacttgctgacaagtttgaagatgcaagagacaaccag
gaggacatcatgattagagtgaagagaatcttgcacagtttgaattcaaagcttcctgtg
ctgtcggatagcgagaaagacatgaagaaagaacttaaaagtatcagtgagcaactcgag
gacctgggaaacggtgtcaagcaggtgcatatgaagagtgcataccagcagagggaaata
cacgagcaagatagtccgcggaaaaagagcatctcactcagtgtgtcccagaaaaagtgc
attcaatctgtgttaaaggagcagagtgaacgtattactgaaatggtgaggaaaattaat
gacatcagaactcatgtgaacttttag
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