Rhincodon typus (whale shark): 109933135
Help
Entry
109933135 CDS
T06055
Name
(RefSeq) autophagy-related protein 16-1-like
KO
K17890
autophagy-related protein 16-1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04136
Autophagy - other
rtp04140
Autophagy - animal
rtp04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109933135
04136 Autophagy - other
109933135
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109933135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109933135
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109933135
Membrane trafficking [BR:
rtp04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
109933135
Others
Specific organelles associated proteins
Auto phagosome
109933135
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
109933135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ATG16
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
RMC1_N
Beta-prop_ELP1_1st
DUF4472
Beta-prop_NWD2_C
ACBP4_C
Motif
Other DBs
NCBI-GeneID:
109933135
NCBI-ProteinID:
XP_048453816
LinkDB
All DBs
Position
6:3578712..3657322
Genome browser
AA seq
529 aa
AA seq
DB search
METPSEGTDWRKHIIRQLQHRDLRQKLHFEDLIHSCEPLALLAQAVFDLSKQRKHREVEL
EVSQNRLVELEVKLSELEGERDRLLARFEEVEEANGRLKKEYDSLQQLYRSQWEQLLKQE
VEGTELIQSMIDIKAQAARDLNYRNEKPKRVKEKNLEKDLAIVSRVPISLDTEVFHPVQK
LSPEAVSHQETKIFKPFQSFRSSSLSLPPHPRLFQSFKDLFRKRANTSFVGVDCNPTNFC
SVARVPARVRFSLQEAHDGEVNAVKFSPNSKILATGGSDRKVKLWDIVGDTWAISRLWLA
SGKYNHATHAPDNDNPQQENLTIDPLHSMAFPSSEYPTITLLRVNVDQSPDQTGTAIKHS
GYKGVSSIPLPSRCSDIVCSDYLIISGHFDEKVRLWDSRSGMKTDEIPLQGKVTSLDINS
ERTQLLSCSRDDLLKVVDLRMNETRQELRAEGFKCGADWTKAIFSPDGSYAIVGSSDGVL
YVWDTLTGKLETSLVGQHRSSINAVSWSLSGEYVVSVDRSRLANLWTDC
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggagactcccagcgaaggcacagactggaggaagcatattatccgacagctccagcac
cgagatctccgccagaaactccacttcgaggatctcattcactcctgtgagcctcttgct
cttctcgcgcaggcggtcttcgatctgagcaaacagcgcaaacacagagaagtggaactc
gaggtcagtcagaacaggttggtggagctggaggtgaagctgtctgagttggagggagag
cgggaccgattgctagcacgattcgaagaggtggaggaagccaatggcaggctcaaaaag
gagtatgacagccttcagcagctttaccgttcacagtgggaacaactcctgaagcaggag
gtggagggaacagaactgattcagagcatgatcgacatcaaggctcaagcagcgagagat
ctcaattatcggaatgagaagccaaagagggtcaaggagaagaatttggagaaggacttg
gccattgtttcccgtgtccccatctccttagacacagaagtctttcacccagttcagaaa
ctgtcacccgaggcagttagtcaccaggagaccaagatcttcaaaccatttcagagtttt
aggtcaagttctttaagcctcccaccccaccccagactcttccagtcctttaaagacctt
ttcaggaagcgggcaaatacatctttcgttggagtggattgcaatccaacaaacttctgt
tcggtcgcaagagtcccggctagagttcgattcagcttgcaggaagcacatgacggtgag
gttaatgctgtcaagttttctccaaactccaagatcctggcgactggaggcagtgacagg
aaggtgaagttatgggacattgtcggagatacgtgggcaatatccaggctttggttggca
agtggcaagtacaatcatgccacacatgcgccagacaatgacaatccccagcaagagaat
ctaaccattgaccctctgcattcaatggcgttcccatcaagtgaatatcccactatcacc
ttgctgcgggttaatgttgaccagtcacctgatcaaacaggaacagccatcaaacacagt
ggctacaaaggtgttagttcaatccctctcccgtctcgctgcagtgacatcgtttgctca
gactacctcatcattagcggacactttgacgagaaggttcgcctgtgggattcgaggtct
gggatgaagactgatgagatcccactgcagggaaaagtgacgtctttagacattaactcc
gaacggacccagttactcagctgttcacgcgacgatctgctaaaggtggtggatctacgg
atgaacgaaaccaggcaggagctcagagctgaagggtttaagtgtggagctgattggacc
aaggcaattttcagccccgatgggagctacgctatagtgggatcatctgatggagttctc
tatgtttgggacaccctcactgggaaactggagacttctttggttggacaacacagatct
tccattaatgcagtttcctggtctttatcgggagagtacgtggtgagcgtggatcggtca
aggttggccaatctctggactgactgctga
DBGET
integrated database retrieval system
