Rhincodon typus (whale shark): 109933178
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Entry
109933178 CDS
T06055
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109933178
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109933178
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
109933178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Sina_ZnF
zf-TRAF
zf-rbx1
Prok-RING_4
TRAF3_RING
PDZ_Tricorn
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
109933178
NCBI-ProteinID:
XP_048462701
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All DBs
Position
16:complement(43376670..43655415)
Genome browser
AA seq
1068 aa
AA seq
DB search
MGFDPERFSEDVDPDFKCNLCNKVLEDPLATPCGHVFCAGCVLPWVVQRGSCPVQCRRLG
PRELNHVLPLRNLILKLEIRCGNWERGCAKVLRLQHLAEHAEMCEYTPAECRNPGCGQAL
SLRDMDAHMRESCEQRAVGVCQQGCGLVLVHRELRLGSHCCVQALKAHGQALQAQLTGVQ
RQLRKQAVRAGKREKSLLSQLSALQSELQMAALRYQKKFTEYSARIRSLTKNSPAPCSGG
ETLTIIMQRDSGSLGFNIIGGRPCAENQEGAACEGIFVSKVVENGPADKEGGLQTQDRIL
EVNGKDLSRATHEQAVEAFRTAKEPIVVQVLRRTPRTKVINPSHECQLVDMGTQTDITFE
HIMALAKIRPPTPPVVVLEQYLLPEEHPSGQDYYDANDYLGLQTELDREELEYEEVDLYR
LHSQDKLGLTVCYRTDDEDDLGIYISEIDPNSIAAKDGRIREGDRIIQINGNEIQNREEA
VALLTSDESKNISLLLARPEMQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTANMLQ
QKKHEEEEGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENLGDEQTTSNTLSRHMK
LMYSQDTLGSGDMPFSNESLMSGDYTDVDFLGIPADECERFRELLELKCQMQSANRYSLY
YHSSTLDMSKNDQEIVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQYRESWMLQDSS
FHNYNTSIDSRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRTPEN
VNSESTEGTANNPASNGSAQKPLLSLARGREYNPSKSNSATKESDHGHQSEGKEEKSLAE
GTKGQAFTHNSGSRNIPYPTTFHHSPYRHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMS
LVSMCKEPPSQESSNQLEPKMEWKVKIRSDGTRYITKRPVRDRLLKERALKIKEERCGMT
TDDDAISEMKMGRYWSKEERKQHLLRAKEQRRRREFMMQSRLECLKEQQSTDEKKEVNII
ELSHKKMMKKRSKKIFDNWMTIQELLTHGTKSPDGTRIYNSLLSVTTV
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgaccccgagcgtttcagtgaggacgtggatcctgacttcaagtgcaacctg
tgcaataaagtgctggaggatccgctggccactccgtgcgggcacgtcttctgcgccggc
tgcgtgttgccctgggtggtgcagaggggcagctgcccggtgcagtgccgcaggctcggc
ccccgggagctcaaccacgtcctgccgctcaggaacctcatcctcaagctggagatccgc
tgcggtaactgggagcggggctgcgccaaggtgctgaggctgcagcatttggccgagcac
gccgagatgtgcgagtacacgccggctgagtgcaggaacccgggctgcggccaggcgctg
agcctgcgggacatggacgctcacatgcgggagagctgcgagcagcgggcggtcggtgtg
tgccagcaaggctgcggcttggtgctggtgcacagggagctccggctcggctcccactgc
tgcgtgcaggctctgaaagcgcacggccaggcactgcaagctcagctcaccggtgtgcag
cgccagctcaggaagcaggcagtgagagccggcaaacgcgagaagtcgctgctctcccag
ctgtcagccctgcagagtgagctccagatggcagccctccgataccagaagaaattcacc
gagtacagcgccaggatccgctccctgactaagaacagccccgctccgtgcagcggagga
gaaacactgaccatcatcatgcagcgggactcgggttccctgggatttaatattattggt
ggcagaccttgtgcggaaaatcaagagggtgcagcgtgtgaggggatttttgtgtcaaaa
gtagtggagaacgggccagcagacaaagaagggggattacagactcaagaccggattctg
gaggttaatggtaaggacctatccagagcaacccacgagcaggcagtagaagctttcaga
acagccaaagaacccattgttgtacaagtattgcgaagaactccacggacaaaagtaatt
aacccatctcacgaatgtcagctggtagatatgggcacgcagacagatatcacctttgaa
cacatcatggcattggccaaaataagaccacctactccaccagttgtggtactggaacag
taccttttgcctgaagaacatccatcaggacaggattattacgatgcaaatgactatttg
ggattgcaaactgaactggacagagaagaattagaatacgaggaagtagacttgtacaga
ttacacagtcaagacaagcttggtctcacagtttgctatagaacggatgatgaagatgac
ttgggaatatacataagtgagattgatcccaacagtattgcagcaaaagatggccgcata
agggaaggggaccgaataattcagataaatggcaatgagatccaaaacagagaggaggct
gtggccctgttgactagcgatgaaagcaagaacatttctctgcttttggcacggcctgag
atgcagttggatgaaggctggatggatgatgatcgaaacgatttcctcgatgacttgcat
atggacatgctcgaggaacagcatcaccaggctatgcagtttacagccaacatgcttcaa
cagaaaaagcatgaagaagaagaaggcacgacagatacagccacgatattgtcaaaccag
cacgagaaggatagtggtgttgggcgtactgatgagagcactcgaaatgatgaaagttca
gagcaggagaacctcggagatgagcaaaccacttccaataccctcagtcgccacatgaag
ctcatgtacagccaggacactcttggtagtggcgacatgcctttcagtaatgagtcgctc
atgtcgggcgactacacagatgtggattttcttggtattccggctgatgagtgcgagagg
ttccgcgaactgctggagctaaaatgtcagatgcagagtgccaaccggtatagcctgtac
tatcacagcagtactttggatatgagtaaaaatgaccaggaaattgttgaccgagaactt
gaaatgttgaacgaagaattacgcaacattgagcttgagtgtctgaacattgtgcgagcc
cataagatgcagcagctgaaagagcaatacagagagtcatggatgttgcaagacagtagt
ttccacaactataacaccagcattgacagccgtcgacacgagctctccgacatcaccgag
ctgcccgaaaaatccgataaggatagctccagtgcctacaacactggtgagagttgccga
agcacaccactgacattggaattgtctcccgacaactcgttgcgcagaacacctgaaaat
gtcaacagcgaaagcaccgagggaacagccaacaatcctgcttccaacggctcagctcaa
aagccactattgtcccttgccagaggccgagagtataacccctcaaaatccaactctgct
accaaggaatctgaccacggccaccagtctgagggaaaggaggagaaaagtcttgccgag
ggcaccaaaggccaggctttcacccataactcaggttcgcgaaacatcccctatccaacc
acattccaccattccccatatagacatgctcatatcccagcacatgctcaacactatcaa
agctatatgcatttgatacaacaaaaatctgccgtagaatatgcgcagagccagatgagc
cttgtaagtatgtgcaaagagccaccttctcaggaatcctcgaatcagttagagcccaaa
atggaatggaaggtaaaaatccgaagcgatggaaccagatacattaccaagcgacccgtc
agagatagacttctgaaagaacgtgcactgaagattaaagaagagcgctgtggtatgacc
actgatgatgatgcgataagtgagatgaaaatgggccgttattggagcaaagaagaacgt
aagcagcatttgctgcgtgccaaagagcagagaagacggcgtgaattcatgatgcagagt
agattggaatgtttgaaagaacagcagagtacagacgagaagaaggaagtgaacataatt
gaactgagtcacaaaaaaatgatgaagaaaaggagcaaaaaaatatttgataactggatg
acaatacaggaactgttaacccatggcactaaatcacctgatggaacaaggatatataat
tccctgttatctgtaactactgtttaa
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