Rhincodon typus (whale shark): 109933189
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Entry
109933189 CDS
T06055
Symbol
abca4b
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109933189 (abca4b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rtp02000
]
109933189 (abca4b)
Transporters [BR:
rtp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109933189 (abca4b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
ACT_13
AJM1_N
AAA_23
Motif
Other DBs
NCBI-GeneID:
109933189
NCBI-ProteinID:
XP_048457499
LinkDB
All DBs
Position
10:64065887..64178325
Genome browser
AA seq
2378 aa
AA seq
DB search
MSSSNQIFLLLWKNWTLRKRQKLRFLVELVWPLSLFFVLVWLRKSNPLYQQHECHFPNKA
MPSAGMLPWLQGIFCNLNNPCFRYPTHGESPGLVSNYNNSILARVYADVQELLFDKPEIY
KLRKIWDDVCFLSDFMDVLRTNPRKVAGRGIRIRDILKDDEVLTSFLLKEIELSDSVVYQ
LINAQVRPEQFAYGVPDLALKDIACSQFLLDRFLIFLSHRGLRTVLNGICVLSQQRLQRM
EDALYANVDFFKLFKMLPRVLNHYSEGIDLHFWVRIMNDASPILEEFITKDSVQGLLRVI
YPFFTEDGPATFSQLMELLSNLFCGYPENGGSRVFSFNWYEDNNYKAFLGINNTKKESKY
AYDYTTTPFCNALNQNMESNPTTKIVWNVMKPLLMGKILFAPDSPATQQLIKNANVTFEE
LHRLKRIGKIWDEVKPQLWNFFQNSVQMNIIRDSIKNPTVSFFINRQLEDIDLTANDILN
FLHNRQSIEQAEDIPNFSWQNIFNITDQLLSIFNNYMECLNLDKFEGLSDEGQLTHRALY
LLEENKFWAGIVFTDLYPWSNKLPTHVKYKIRMDIDAVERTNKIKDRYWDPGPRADPVED
MRYIWGGFAYLQDMIEHGIIRTHTNIEVPSGIYVQQMPYPCFVDDIFMLALTRCFPIFMV
LSWIYSVSMIVKSIVLEKELRLKETLKIMGVSNWVHWVAWFIDSFAMMAASTVLASIVIM
RGNVLHYSNSFLLFVFLLVFTVATIMQCFLMSVFFSKANLAAACSGIIYFTLYLPHLLCY
AWQDRMTKNMKLAASLLSPVAFGFGTEYLSRYEEQGRGLQWDNIRASPIEGDEYNLLLSI
KMMLFDAFLYGVLAWYLDAVFPGQHGIPSPWYFPLQSLYWFGAEKSQPATDDKKEVKDSA
EYEETKEEKADKSSEETEDKPKEKAAEQPGEQASKPTEEDAEKSGKQLVADDKPKDNKKI
CKLKEKEMQEKERLEKEKQKKERLEKEKQEKERLEKEKQEKERLEKEKQEKEKKEKEKQE
RNPFYEKEPSNLTLGVSIQNLVKVFTEGQKPAVDGLNINFFEGQITSFLGHNGAGKTTTM
SMLIGLFPPTSGTAVINGKDIRTDIDAIRQEIGVCPQHNILFNNLTVAEHILFYTQLKGH
TVEEAEKQTEVMLDEIGLPHKRDELAQNLSGGMQRKLSVALAFIGAAKVIVLDEPTSGVD
PYSRRSIWDLLLKYRAGRTIILSTHHMDEADLLGDRIAIISQGKLQCCGSSLFLKNCFGS
GFYLTLVRRMKKAQRRKQGAMPTCTCGTGCRCSCSNCSPIDETLPEEELDGDVDTLTNLI
KHHVPDAKLMENVGQELYYLLPSKDFKHRAYASLFREIEETLQDLGLSSFGVSDTSLEEI
FLKATEDPMPATASKEASQNGQAAEKGQSVERKASASEVKPNGDAVTEGTDPASAGSPAP
ATTNPQPGGYDGKGSRQIQGSDLVKQQFKALFIKRFNHAIRSQKDFLAQFLLPANFVLLA
LIFSLIIPPFGEYQSLTIHQWMYGKQYTFFSNERPWNKKMDQLTEALVNKPGFGTRCMRE
NPIVGYPCSNQSSDWKIPKSDPTIVNVLQSPFYSKSNPSPSCQCSTGNRLIMLPDCPAAA
GGLPPAQRVQHTTDILQNLTQRNISDFLVKTYSKLIKSSMKSKYWVNEQRYGGISVGGKL
PVLHVDHKQIDVLFTNLGRMFNVTGGNNTQMTFRSLNVFLKHLETEDNVKVWFNNKGWHA
IVAFMNVANNAILRANLPEHHYAEDYGITVINHPLNLTKEQLSEVTVLTTSLDAVISISV
VFAMSFVPASFVLYLIQERVSNAKHLQFVSGTSHTTYWVSNFLWDMCNYSVTTVMVVLIF
IGFNKKAYTSPQNLPAFIALLLFYGWAVTPMMYPASFVFSVPSTAYVALSCINLFIGING
SAATFILELFENNRALQMFNKILKNILIIFPHFCLGRGLIDMAMNQAVTDVYARFGEDFY
FSPFHWEFVGKNLTAMAVEGVVYFLLNLIIQHRFFLTNLTYAEYLPTCYRPPILSNLPAI
EEDDDVAKERERIRGTGKHDILKIKELTKYYSGRNRPAVDRISVGVRPGECFGLLGVNGA
GKTTTFKMLTGDIDPTSGEASVAGYSIFTHIDDVHQNMGYCPQFDAIDDFLTGREHLLLY
ARLRGIPEDEIEQVANWGIEKLDLAEYADQTAGTYSGGNKRKLSTAIALIGCPPVVLLDE
PTTGMDPKSRRFLWNCLLSVIREGRAVVLTSHSMEECEALCTRLAIMVNGQFKCLGTIQH
LKYKFGDGYVVTLKIKGTQPGASPDLNPAEEFFKSNFPDSLQIEKHHNMIQYQLSSSSLS
KIFQLLISNKEQLKIDEYSVSQTTLDQLATTIHKHALQ
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgagctcctccaatcagatctttctgctgctttggaagaactggacgctcaggaagaga
caaaagctccgttttctcgtggaactcgtctggcccctctcactgttctttgttttggtt
tggttacggaaatcaaacccactctaccaacaacatgaatgccattttccgaataaagcg
atgccctctgcagggatgttgccatggttacagggaattttctgtaatctgaacaacccc
tgtttccgctaccctacacacggagaatctcctggtttggtttcaaactacaataactcc
atacttgctcgagtatatgcagatgttcaggagctgctgtttgataagcccgaaatctat
aagctaaggaagatctgggatgatgtgtgttttctgtcagacttcatggatgtactcaga
actaatccgagaaaagttgcaggaagaggtattcgaatcagggatattctgaaggatgac
gaagtcctgacctcctttttactcaaggaaattgaactctcggactctgtcgtttatcag
ttgatcaatgcccaagtgcggcctgaacagtttgcttatggagttccagacctagccctc
aaggacatagcatgcagccaatttctgctggatcgtttcctcattttcttgagtcaccga
ggactgcgtactgtcctgaatggaatttgtgtgctttcccaacaacggctccagagaatg
gaagatgcactttatgcaaacgtggatttctttaaactcttcaaaatgcttccaagagta
ctaaaccattattcagaaggaatagatctgcatttttgggtgagaattatgaatgatgca
tcacccatattagaggagtttatcacaaaggacagcgttcaaggtttgctccgagtgatt
tacccattctttactgaagatggaccagccacattcagtcagttgatggaactattatca
aatctgttctgtgggtatcctgaaaatggaggctctcgtgttttctcttttaactggtat
gaagacaacaattacaaggcttttcttggaatcaacaacacaaagaaagagtcaaagtat
gcttatgattacacaaccactccgttctgtaatgcactaaatcaaaacatggagtccaac
cctacaaccaagattgtgtggaatgtgatgaaaccactactgatgggaaagattctgttc
gccccagattcccctgcaacccaacagctgataaaaaatgctaatgtcacttttgaggag
ctacacagacttaaaaggattggaaagatttgggatgaggtgaagcctcagctgtggaac
ttcttccaaaacagtgtacaaatgaacataatacgtgactcaataaaaaaccccaccgta
tcgtttttcataaacaggcaactggaagacatagacttgactgctaatgacattctaaac
ttcctacacaatagacaatctatcgaacaagcagaagacattccaaactttagctggcaa
aatatttttaatataacagatcaactcttaagcatattcaataattacatggagtgttta
aacctggataaatttgaaggcctttctgacgaagggcagctcacccaccgggcactttac
ttgttggaggaaaacaagttttgggctgggattgtgtttacggacttatacccctggtcg
aacaagcttccaactcacgtgaagtataaaatccgaatggacattgatgcagtggaacga
acaaataaaataaaagacaggtattgggacccaggtccgcgagctgacccagtagaggat
atgcgctacatctggggcggttttgcttatttacaagatatgattgaacacggaattatc
aggactcacaccaacattgaggtgccatcgggaatttatgtccaacagatgccgtatccc
tgctttgttgatgacatcttcatgctagcgttaacccgttgcttcccaatttttatggtg
ctctcctggatctactccgtctccatgattgtgaagagtattgtgcttgagaaggagctg
aggttgaaagaaaccctgaaaatcatgggagtcagtaattgggtgcattgggtcgcatgg
ttcatcgacagcttcgccatgatggcagccagtacagtgctggcatccatagtgattatg
agaggaaacgtgcttcactacagcaattctttccttctttttgtgtttctcctggtgttc
actgtggccacaattatgcagtgctttttgatgagtgttttcttctccaaggccaatcta
gcagctgcttgcagtgggatcatttacttcaccctctatctgcctcaccttctctgctat
gcttggcaggaccgtatgaccaaaaatatgaaattggcagcgagtttgttatctccagtg
gcatttggctttggcacggagtacctatcccgttatgaggagcagggtcgtggacttcag
tgggataatatccgtgccagccctatagaaggagatgagtataatctgctgctatccatc
aagatgatgctgtttgatgcctttttgtatggagttcttgcctggtatcttgatgctgtg
tttccaggccaacacggaataccatctccatggtattttccactgcagtccttgtactgg
tttggcgctgaaaaatcacaacctgccacagacgacaaaaaggaagttaaagacagtgca
gaatatgaggaaacgaaggaggagaaagcagacaaatctagtgaggaaacagaagacaaa
ccaaaagagaaagcagcagaacaacctggagaacaagcaagcaaaccaacagaagaagat
gcggagaaatcaggaaagcagctggtagctgatgacaaaccaaaggacaacaaaaaaata
tgtaaactgaaggagaaggaaatgcaagagaaagagaggctggagaaagagaaacagaaa
aaagagaggctagagaaagagaaacaagaaaaggagaggctggagaaagagaaacaagaa
aaggagaggctggagaaggaaaagcaggagaaagagaagaaagagaaagagaaacaagaa
agaaaccccttttacgagaaggagccatcaaatctgactctgggagtctctattcagaac
ctagtgaaggtttttacagaggggcagaagccagctgtggatggactgaacattaacttc
tttgaagggcagatcacttcctttttgggtcacaatggagctggaaagacaacaacaatg
tcaatgctgataggcttatttccacctacatcagggactgcagtcattaacggcaaagat
atccgcacagatattgatgcaattcgacaggaaattggtgtgtgcccccagcacaatatt
ttatttaacaacctaacggtggcagagcatattttattctacactcaactaaaaggccat
acagtggaagaggcagagaagcagacagaagtaatgttggatgagattggacttcctcac
aagagagatgagctggctcaaaatttatccggtgggatgcagcgcaaactatcagtagcc
ttagcattcatcggagcagctaaagtaatcgttttggatgagccaacatctggagtagat
ccttattccagacgatccatctgggatctcttactgaagtaccgtgcaggaagaaccatc
attctctccactcaccatatggatgaagcagatcttcttggcgaccggatcgcaatcatt
tctcagggaaagctgcagtgttgtggctcctctttgttcctgaagaactgctttggttct
ggtttctatctgaccctggttcgcaggatgaagaaggcacaacgaaggaaacaaggtgct
atgccaacatgcacctgtggaacaggctgtcgctgctcctgctccaactgttctcctatt
gatgaaaccctaccagaagaggaactagacggtgatgtagatacattgacaaatctcatc
aaacatcatgttcctgatgccaagttgatggaaaatgttggtcaagagctttactacctg
ctgcccagtaaagatttcaaacatagggcctacgctagcttgttccgggaaatcgaggag
actctgcaagatttaggcctcagcagctttggggtgtctgacacttcactggaggaaata
tttctaaaggcaactgaagatcccatgcctgcaacagcatctaaagaggcttctcagaat
ggacaggcagcagagaaaggccaaagtgttgaaagaaaagcatcagcctctgaggtgaaa
ccaaacggcgacgcggtgacagaaggtacagatccagcttctgcagggtctcctgccccc
gctaccaccaacccccaaccaggtggatatgatggcaaaggctccaggcagatccaaggt
tcagacctggtcaaacagcagttcaaagcattgtttatcaagagattcaaccacgctatt
cgcagtcagaaggatttcttggcccagtttctcctgcctgcgaactttgtgctgttagct
ttgatcttctcactcataatcccaccatttggggaatatcaaagtttaaccattcaccag
tggatgtatggcaaacagtacactttcttcagcaacgaacgtccatggaataagaagatg
gatcagttgacagaggcgctggtgaataagcctggatttgggactcggtgcatgagggag
aatcccattgtaggttatccctgcagtaatcaatcgtctgattggaagattccaaaaagt
gaccccacgattgtcaacgtgctgcagtccccattctattccaaaagcaacccttcacca
tcctgccagtgcagtacaggaaatcgattgattatgctcccagactgccctgcagcagct
ggtggtcttcctccagcacagagagtccaacacacaactgacatcctgcaaaatctcacc
caaagaaatatatcagacttcctggtcaaaacatactcgaaactaataaaaagcagcatg
aagagcaagtactgggtcaatgaacaaaggtacggtgggatttcagtcgggggaaagctt
ccagttttacacgtcgaccataaacagatcgatgtcctttttaccaatttgggtcgtatg
ttcaatgtcactgggggcaataatacacagatgacgtttagaagtctgaatgttttcctg
aagcatttggagactgaagataacgtcaaggtgtggttcaacaacaaaggctggcatgcc
atagtggcatttatgaatgttgccaacaatgcaattctgcgagcaaacctacccgaacat
cattacgcagaagactacggcataactgttataaaccatccactcaacctcacaaaggag
cagctttcagaagttactgttcttactacctcattggatgcagtgatttcaatcagtgtt
gtcttcgccatgtcttttgtcccagccagctttgtgctttacctcattcaggagagagtt
tcaaatgctaagcatcttcaatttgtcagtggaacgagccatactacttactgggtgtcg
aattttctctgggatatgtgtaactattcagtaaccacagtgatggtagtcttgatcttt
attggcttcaataagaaagcttacacttctcctcaaaacctgcctgcattcatagctttg
ttgctgttctatggatgggcagtgactcccatgatgtacccagcatcttttgtcttcagt
gttcctagcacagcctacgtggctctgtcctgcatcaatctcttcattggtatcaatggc
agcgctgccactttcattcttgagctgtttgaaaataatagggcgttgcaaatgtttaat
aaaatattgaaaaatattctaatcatatttccacacttttgtctgggaagaggtttgatc
gatatggccatgaatcaagcagtgactgatgtatatgctaggtttggtgaagatttttat
tttagtccattccattgggagtttgttggcaagaacctcacagccatggcagtggaagga
gtagtctacttccttttaaatctcattatccaacaccgcttcttcctcaccaacctcacc
tacgctgaatatcttcctacttgttacaggccaccaatcctcagcaacttacctgccatt
gaagaggatgatgatgtagctaaggaacgcgaaagaattcggggtacaggcaagcacgac
attctgaaaataaaggaactgaccaaatattattcagggagaaacagaccagctgtggat
agaatcagtgttggtgtgcgcccaggagagtgctttgggctgttgggtgtcaatggtgct
ggaaagacgactacattcaaaatgctgacaggtgatatagatccgacctcaggtgaagct
tcagtagcaggctacagcatttttacccatattgacgatgtccaccagaacatgggatac
tgccctcagtttgatgctatcgatgacttcctgacaggccgtgaacaccttttactgtac
gcaaggctgcgcggtattccagaggatgagattgaacaggttgccaactgggggattgaa
aagctggatctggcagagtatgctgatcagacagctggcacgtacagcggagggaacaag
cgtaaactctccacagccatcgccctcatcggctgccctcctgttgtcttgctggatgaa
ccaaccacagggatggatccaaaatctcgcaggttcctctggaattgtctcctcagtgtt
atccgagaaggaagagctgtcgtgttgacctcacacagtatggaagaatgtgaagctctc
tgcacaagactggccatcatggtgaacgggcagttcaagtgcctgggtaccatacagcac
ctcaagtacaagtttggtgatggctacgtggtgactttgaagattaaaggcactcagcct
ggagcttcacctgacctgaatccagctgaggaattcttcaaaagcaacttccctgacagc
ttgcaaatagagaaacatcacaacatgatacagtatcagctgtcttcatcatcattatcc
aaaatcttccagttactcatctccaacaaagagcagttgaagatagatgaatactcagtc
tcacaaacaactttagaccagcttgctaccactatccacaagcatgcactacagtga
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integrated database retrieval system
