Rhincodon typus (whale shark): 109933300
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Entry
109933300 CDS
T06055
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-1-like isoform X1
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04080
Neuroactive ligand-receptor interaction
rtp04082
Neuroactive ligand signaling
rtp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
109933300
04082 Neuroactive ligand signaling
109933300
04519 Cadherin signaling
109933300
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtp04040
]
109933300
Ion channels [BR:
rtp04040
]
Ligand-gated channels
GABA-A
109933300
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
109933300
NCBI-ProteinID:
XP_020387863
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All DBs
Position
12:49850941..49899129
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AA seq
455 aa
AA seq
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MERITALTSCVSAIFWLLFLNAAFRPSFAMSDEAKNNITIFTRILDSLLDGYDNRLRPGL
GERITQVKTDIYVTSFGPVSDTDMEYTIDVFFRQSWEDERLKFKGPMTILRLNNLMASRI
WTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACP
LKFGSYAYTTSEVMYTWTHGASQSVVVAEDGSRLNQYDLMGQSVGTVIIKSSTGEYVVMT
AHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISAR
NSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRSWAWDGKSLVPEKRKEKDREA
LLKKNNTYTATSANFAPNIAKDAGLATIAKSAGAESKEPKPEQKPPEPKKTFNSVSKIDR
LARIAFPLMFGIFNLVYWATYLNRELVIKGDDEHD
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggagcgaattactgctctcaccagctgcgtatcagcgatattttggcttctgttccta
aacgcagcgttccgcccaagctttgcaatgtctgatgaagccaagaacaacattacaatc
ttcacaagaatcctcgacagtcttctggatggatatgacaaccgtctgagaccaggcttg
ggagagcggataacacaagtcaagactgatatctacgtgacaagttttggacctgtttca
gatacagatatggaatatacaatagacgtgttttttcgtcagagctgggaagatgaaagg
ttgaaattcaagggacccatgacaatacttcgtttaaataatctaatggccagcagaatc
tggacaccagatacgttcttccacaatggaaaaaaatcagtggcgcataacatgactatg
cccaataaattgctgaggattactgaagacggaacactcttgtacacaatgagattgacc
gttcgtgctgagtgtcctatgcatttagaagatttcccaatggatgctcatgcatgtcct
ctaaaatttggcagttatgcatacacaacatccgaggtcatgtacacgtggacacatgga
gcatcccaatcagttgttgtagctgaagatggctctcgtttgaatcaatatgacttaatg
ggacaaagcgtgggaacagtcattattaaatccagtacaggtgaatatgtggttatgact
gctcacttccacttgaagagaaaaattggctactttgtaattcaaacttacttaccatgt
atcatgacagttattctctcacaagtgtcattctggttaaacagggaatctgtccctgca
agaactgtctttggggtcacaactgtattgactatgacaacactgagcatcagtgccagg
aactcactccccaaagttgcatacgcaactgctatggattggttcatcgccgtttgttat
gctttcgtgttttcagcacttattgaatttgccacagtgaactacttcacaaagaggagt
tgggcttgggatggaaaaagcttagttcctgaaaagagaaaggaaaaggaccgagaggct
ctattgaagaaaaacaacacctacacagcaacatcagcgaactttgcaccaaacattgca
aaggatgcaggcttggcaactattgcaaagagtgctggtgccgaatcaaaagaacccaaa
ccagaacaaaagcctccagaaccgaagaaaactttcaacagtgtcagtaaaattgacaga
ctggccagaatagcatttccattaatgtttgggattttcaacttggtttattgggctact
tatttgaatagagagttagttatcaaaggtgatgacgagcatgactag
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