Rhincodon typus (whale shark): 109933337
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Entry
109933337 CDS
T06055
Symbol
pcdh7b
Name
(RefSeq) protocadherin-7b isoform X1
KO
K16498
protocadherin delta 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
109933337 (pcdh7b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtp01009
]
109933337 (pcdh7b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtp04515
]
109933337 (pcdh7b)
Protein phosphatases and associated proteins [BR:
rtp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109933337 (pcdh7b)
Cell adhesion molecules [BR:
rtp04515
]
Cadherins
Protocadherins
109933337 (pcdh7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
Mid2
LYRIC
RIFIN
Adeno_E3_CR2
DUF6479
KIAA1549
Motif
Other DBs
NCBI-GeneID:
109933337
NCBI-ProteinID:
XP_048458566
LinkDB
All DBs
Position
1:complement(90471553..90831553)
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AA seq
1245 aa
AA seq
DB search
MTFWFPLLLFLRTAAVLASAKQALRYRITEEGPADVRIGNVAADLGIVAGSGEVTFSLES
GSEYFKIDNITGELSTTGRRTDREKLPQCQMIFDENECFIDFEVSVIGPAQSWVDLYDGR
VVVEDINDNTPSFPSPVLTLTVEENRPVGTLYLLPTATDRDFGTNGIERYELLVPEESSG
EGTRRNPSPEAQARGGGSSSSVFELQVADTPDGDKQPQLIVKGALDRERRDSYELSLRVR
DGGEPPRSSSALLRVLISDVNDNSPRFERGLYEAELAENSPPGTPVLQLRASDLDAGVNG
QIEYGFGAATEAVRRLLRLDESTGRLSVLHRPDREELSQLRFTVTAKDRGQPARTDRATV
SLRVRDQNDNAPRVDIRKIGRIVLRDGVAQVAEDVLVDTPVALVQVSDRDQGENGAVTCT
VVGDVPFQLRPAGGGDGEAADGEQRARKYFLHTSAPLDYEAARQYTVAIVAVDSGSPSLS
GNNSLLVRVTDVNDNPPVFPQPLVRVSVAENNRPGEPVASVRASDADDGKNAEVAYSLEP
SSSGGGGGGGGGGGGGGGGGGGGGAAAGLFSIDPLKGDIVANAVLDREQTERYEFKVVAR
DKGSPSLQGSATVLLQVTDTNDNEPRFMQDVFTFYVKENLPPHSPVGMVTVMDADQGSNA
ELSLLVEEDGGIFSIDNDTGTIYSTVSFNREQQTTYSFKVKAVDGGDPPRSSTAMVSLYV
MDENDNAPTITFPKNASYTLLPPSSNLRTVVATVLATDRDTGINADLNYSIVGGNPFKLF
EIDSASGVISLVGKLTQKHYGLHRLIVQVNDSGQPSQYTTAMVHVFVNESVSNATIVEAQ
IARSLRTSLKQDIAGDPNYEMSKQRLSIVIGVVAGVMTVILIILVVVLARYCRPKKSKNG
YEAGKKDPEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPNGQRYDSVNEKL
TESPGMGRYRSMNGGPGSPDLGRHYKSSSPLPTVQLHPQSPTAGKKHQAVQELPPANTFV
GTGDNISIESDHCSEYSCQINNKYNKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESE
TPSSKSSSGPRLGSLPLPEDNYERTTPDGSVGEAEHMENDSRPLPDVALTGKCTRECDEF
GHSDSCWMPVRTSPERRKKNPPKLSTFMPVADRGSQEKLANGAPQIIGDRNRNLLNKRLT
SSYENFNNASYAKNEEGNPEDIPLTQTADFKPSSVSQLTRREVYL
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgactttctggttcccgctgctgcttttcttgcggaccgccgcggtgctggcgagcgcc
aagcaggctctccggtaccggatcaccgaggaaggaccggccgatgtgcggatcggtaac
gtggccgccgacctgggcatcgtggcgggctcgggcgaggtgactttcagcctggagtcg
ggctccgagtacttcaagatcgacaacatcaccggggagctgagcacgaccgggcgccgc
accgaccgcgagaagctgccgcagtgccagatgatcttcgacgagaacgagtgcttcatc
gacttcgaggtgtcggtgatcgggccggctcagagctgggtcgacctgtacgacggccgc
gtggtggtggaggacatcaacgacaacacgccgagcttcccgtcgccggtgctcaccctg
acggtggaggagaaccggccggtcggcaccctctacctgctgccgaccgccaccgaccgc
gacttcggcaccaacggcatcgagaggtacgagctgctggtgcccgaggagagctccggc
gaaggaacccggagaaaccccagccccgaggcccaggcccgcggcggcggcagcagcagc
agcgtcttcgagttacaagtggccgacaccccggacggcgacaagcagccgcagctgatc
gtcaagggcgccctggaccgggagcggcgggactcgtacgagctgagcctgagggtgagg
gacggcggcgagcccccgcgctcctcgtccgccctgctgcgggtcctcatctcggacgtg
aacgacaacagcccccgcttcgagcgaggcctgtacgaggccgagctggcggagaacagc
ccgccggggaccccggtgctgcagctgcgcgcctccgacctggacgccggcgtcaacggt
cagatcgagtacggcttcggggccgccaccgaggcggtgcgccgcctgctgaggctcgac
gagtcgaccggccgcctgagcgtgctgcaccggcccgaccgcgaggagctgagccagctc
cgcttcacggtcaccgccaaggaccgagggcaaccggcccgcaccgaccgcgccaccgtc
tcgctccgggtccgcgaccagaacgacaacgcgccccgcgtcgacatccgcaagatcggc
cgcatcgtgctgcgggacggcgtggctcaggtggccgaggacgtgctggtcgacaccccg
gtggcgctggtgcaggtctccgaccgggatcagggcgagaacggggcggtgacctgcacc
gtggtgggcgacgtgcccttccagctgaggccggccggcggaggggacggcgaggcggcc
gacggagagcagcgggcccgcaagtatttcctgcacacctcggcgccgctcgactacgag
gcggcccgccagtacacggtggccatcgtggccgtggactcgggcagccccagcctgtcc
ggcaacaactcgctgctcgtccgcgtcaccgacgtcaacgacaacccgcccgtcttcccg
cagccgctggtgcgggtctcggtggcggagaacaaccggcccggcgagcccgtggcctcg
gtgcgggcttcggacgccgacgacggcaagaacgccgaggtggcctactcgctggagccg
tcgtcgtcgggaggaggaggtggcggcggcggcggcggtggtggaggaggtggaggagga
ggaggaggtggggccgcggcgggcctgttctccatcgacccgctgaagggggacatcgtg
gcgaacgcggtgctggaccgggagcagaccgagcgttacgagttcaaggtggtggcccgg
gataagggcagccccagcctgcagggcagtgccaccgtgctgctgcaggtgaccgacacc
aacgacaacgagccccgcttcatgcaggacgtcttcaccttctacgtgaaggagaacctg
cctccgcacagcccggtcggcatggtgaccgtcatggacgccgaccagggcagcaacgcc
gagctcagcctcctggtcgaggaggacggcggcatcttctccatcgacaacgacaccggc
accatttactccaccgtgtccttcaacagggagcagcagaccacctactctttcaaagtg
aaagccgtggacggcggggaccccccgaggtcgtccacggccatggtgtcgctgtatgtc
atggatgaaaacgacaacgcgccgaccatcaccttcccgaaaaacgcctcctacactctg
ctacccccttccagcaacctgcggactgtggtggctacagtcctagcgacagatcgagac
actggcatcaacgctgacctcaactacagcatcgtggggggaaatcccttcaaacttttt
gagattgattcagccagcggtgtaatctctttggtgggaaagctcacccagaagcactac
ggactacaccggttgatagtgcaggttaatgatagtggacagccttcgcagtacaccact
gcaatggtccatgtatttgtgaatgagagtgtttcaaacgctacaatagtggaggcacaa
atagctagaagtcttcgcacttcattgaagcaagacattgcaggtgatccaaattatgag
atgagcaagcaacgactgagcattgttattggggttgttgccggtgtcatgacagtgatt
ttaatcatcttggttgtggtgttggcgaggtactgtagacccaaaaagtccaagaatgga
tatgaggcaggaaaaaaggatccagaagactttttcaccccccagcaacatgacaagtct
aagaaacccaagaaggacaaaaagaacaaaaagtccaaacaacctctgtacagcagcatt
gtgactgtggaagcatcaaaaccaaatggacagagatatgacagtgtgaatgagaaactt
acagagagccctggcatgggtcgctatcggtccatgaatggcggacctgggagccctgac
ctcggcaggcattacaaatctagctccccattgccaacagttcagcttcatccccagtca
cccactgcaggaaagaaacatcaggcagtgcaagaactaccacctgctaacaccttcgta
gggacaggtgacaacatctcaattgaatcagaccattgctctgaatacagctgtcagata
aataacaagtacaacaagcagccttttcgtcgtgtgactttctctgttgtgagtcagcct
caggatccacatcaggggtccctacaaagctgttatgatagtggcttggaagaatcggaa
acaccgagcagcaagagttcatcaggaccaagactaggctcactcccacttccggaagac
aactacgagaggaccacacctgatggcagcgttggtgaggcagaacacatggaaaatgat
tcaaggcctttgcctgatgtagctttgacaggaaaatgtacacgtgaatgtgatgagttt
ggccactctgactcctgttggatgccagtgcgcacctcaccagagagaagaaaaaagaac
ccacccaagctttctacattcatgcctgtcgcagatcgaggcagtcaagagaagctcgcc
aatggtgcccctcagattataggtgatcgcaatcgaaaccttctcaacaagaggctgact
tcatcatacgagaacttcaacaatgctagttatgctaaaaatgaggaaggcaatcctgaa
gatatacccctgacacaaacagcagatttcaagccatcttctgtttctcaactcacgaga
agagaagtctacctgtga
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integrated database retrieval system
