Rhincodon typus (whale shark): 109933425
Help
Entry
109933425 CDS
T06055
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04010
MAPK signaling pathway
rtp04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109933425
04020 Calcium signaling pathway
109933425
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtp04040
]
109933425
Ion channels [BR:
rtp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
109933425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
109933425
NCBI-ProteinID:
XP_048465643
LinkDB
All DBs
Position
21:13922066..14182849
Genome browser
AA seq
2196 aa
AA seq
DB search
MAKWNLCMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFFEDSFAM
YYNVSLPPNYQIEGDETPFICSLPRDNGMQKCQDLPNLKENGAECFLSLDSYSHPRYSLE
MNNTSGCINWNQYYNMCKTGDVNPHKGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDA
HSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRENQLMQEQRARFLSNDSTIASF
SEPGSLYEELLKYICHLFRKVKRRTLRLYNIWQNKQRKKVTPNSSNGQGRKWRNKGRVRS
IHHLIHHHHHHHHHHYHISNDNSKAQQGSPELCDMEMKSLRSGSKLMLPSSALNHQSPSS
GTESVRSIYHADCHFEGPQMTYKSSTTTNVKLMTGITHHGGMNYPTIVPPVTSRSSCTPK
LKGNSSSNTPITVGRRNPNMNLADSYGKLHHFVGEHGIFRAASKLSGLNVSCSTPNAQAG
VLTCELQNCPYCAHALENPDLELSDSESCDSDADGVYEFTQDITQGDHSDQRHKNKKKPK
EKNKLVLLWTLFSERMKRIVGSKYFNRGIMIAILINTLSMGIEYHQQPEELTNALEISNI
VFTSMFALEMILKLFAFGLFGYIKNPYNIFDGIVVIISVWEIIGQSDGGLSVLRTFRLLR
VLKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKMENGDT
IPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFGNYVLFNLL
VAILVEGFQAEGDANRSDTDEEKTSANFDEECEQFKDHSSDLKMYSVVMTSNGHLDSRSS
IPPPIIMRTAATPMPTPKSSPCMDSVHTYLESRRGSSASIDPTNYDQRSLSSIRSSPCAP
WGTNSNWGSRRSSWHSLGRAPSLKRKNQSDERESLLSGVGRENCGEDDESEDAKSSKAGS
LSGWSLHHRAEFFDTKGSIDLPELLQVPVMRHSVTFNPMCTTPCDYQDCNGKSLHFPNEI
FPRMDNHKDDPNDYEDEIDDSYCFRVWQFLEPYKPTWCKTHEDWALYLFAPQNRFRIMCQ
KIIAHKMFDHVVLVFIFLNCITIALERPEIDPNSTERMFLSVSNHIFTAIFVVEMALKVI
ALGFFSGENAYLQSSWNILDGILVFVSVIDIIVSLASAGGAKILGILRVLRLLRTLRPLR
VISRAPGLKLVVETLITSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYHCDGHDTRNIT
NKSECVQANYKWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAIGIDKQPQRNHN
PWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKA
QRRPYYADYSPARLYIHKLCTNHYLDLFITFIIGINVITMSMEHYHQPPSLEEALKYCNY
VFTIVFVFESILKLIAFGFRRFFKDRWNQLDLAIVLLSIMGITLEEIEINASLPINPTII
RIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKL
VCNDENPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLRECGSEDKHCLTYLPF
FSPVYFVTFVLIAQFVLVNVVVAVLMKHLEESNKEAKEDAELDAEIELEMSRTQGASTSS
IGQTPILDSRATGAGQESVRLESPVHVKQLVEDPRYSKIIGENQTENLLTVRKVSVSRMH
SLPNDSYMFRPVRSAQSHYPLHEVDPHQGSVTSVQSQPAEVSTCLGVPTEESARNDSVDV
VNAESKNSLKLESNDSLQPKLSPHHILVPPLMYSTPLSPKVTPPPSPLLTQRSKQSSVRT
HRQVYSQRSIPSRSPSHSSDSNSPASSFLNSVDPADEEVRYINSSMRNWKRQSEVRSLSL
SPFLSLNLSTVALKNSNSTASLTGIGREKDLKKFYSVDAQGLLAKPSWADDLRRHSIEIC
PSIDDEDSNLQLEVPFSTEEKREPSVHVQSDSEYILAAQRKKKMSPPCISIEPPMESESG
PTSHTAVCEARMHLRKRTLSFESMAHRDSLELGDLQPGSQTSITDQRIPQPCQSKHLTIP
DLSFDHSDVSSLSSLSDLFSDSNHSTPSSSISADSRVELLASKRKKIDHLKASSENPDIH
RPENSKEVLSVTSTPLRKRGLVRMTSTREDTDDLVV
NT seq
6591 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatggaacttgtgtatgagaatactagtgactttactgctagatactctgcct
atgttaggcaatgtccttctcctttgtttttttgtcttctttatatttggaattgttgga
gtgcagctatgggctgggctgctaaggaacaggtgtttttttgaagacagctttgcaatg
tattacaatgtttctttacctccaaattatcagatagaaggtgacgaaactccatttatt
tgctcactgccacgggacaatggcatgcagaaatgtcaggaccttccaaatttgaaagaa
aatggagccgaatgttttcttagcttggattcttacagccacccaagatatagcctggaa
atgaacaatacaagtggttgcataaactggaatcaatactacaacatgtgcaaaacggga
gatgtaaatccacataagggtgccattaattttgataatataggatatgcctggattgcc
atttttcaggttattaccctggaaggatgggtagacatcatgtattatgttatggatgca
cattctttttacaattttatatattttatactgcttataatagttggttcattcttcatg
attaacttgtgcctggttgtcatagcaactcagttttcagaaacaaagcaacgtgagaac
cagttaatgcaggagcagcgagcccgctttctttcaaacgatagcacaattgccagtttc
tctgagcctggaagcctctatgaagagctccttaaatacatttgccacctcttcaggaaa
gtgaagcggcggacactgcgcctttacaacatttggcagaataaacaacgcaaaaaggtc
accccaaacagttcaaatggccaagggaggaaatggcggaataaaggtcgtgtaaggtca
atccatcatttaattcaccatcatcatcatcatcatcatcatcattaccatatcagcaat
gataattcaaaggcacagcagggcagtccagaactttgtgatatggagatgaaatcattg
cgatctggcagtaagctcatgcttccttcatctgcactaaaccatcagagtccttcttca
ggtactgagtcggttcgcagtatttaccatgccgactgccactttgaaggcccacaaatg
acatacaagtcttccactacaactaatgttaaactaatgactggcattacacaccatgga
ggcatgaactatccaacaattgttccacccgtgactagtagaagcagctgcacaccaaaa
ctaaaaggcaacagtagcagtaatacacccatcactgtgggcagaaggaacccgaacatg
aacttggcagattcctatggcaaactgcaccattttgtgggagaacacggaatctttcga
gctgcaagcaagttatcagggctcaatgtgtcatgttccacacccaatgcacaggctggt
gttttgacttgtgagctccagaactgcccttactgtgctcatgctttggaaaatccagac
ctggagctcagtgattcagaaagttgtgattctgatgctgatggcgtgtacgaatttacg
caagacatcacacaaggtgaccacagcgatcagagacacaagaacaaaaagaaaccaaag
gaaaagaataaattagtcctgctatggacattattctctgaaagaatgaaaagaattgtg
ggaagtaaatacttcaaccgtggaattatgattgccattctgatcaatacattgagcatg
ggtattgaataccatcaacagccggaagagcttaccaatgccctggagatcagcaacatt
gtatttaccagcatgtttgctttggaaatgattcttaaactttttgcatttggtcttttt
ggttacattaagaatccatataatatttttgatggaattgttgtcattatcagtgtttgg
gaaatcattggtcagtctgatggtggcctttcggtgctgagaacattccggctgctccga
gttttgaagttggtccgtttcctgcctgcactacgacgccagttagtggttctgatgaaa
accatggacaacgtggctacgttctgtatgctgcttatgctgttcatatttattttcagt
attctgggcatgcacctgtttggatgtaaattcagcttgaagatggagaatggagacaca
ataccagacaggaagaattttgattcgttattgtgggcaatcgtcactgtatttcagatc
cttactcaggaggactggaatgtagtcctgtataatggaatggcctccacctcaccctgg
gctgccctgtactttgtggcattaatgacttttggcaactatgtgcttttcaacctactg
gttgctattcttgtggaaggcttccaagcagagggtgatgccaacagatcagatacagat
gaagaaaaaacatctgctaattttgatgaggagtgtgaacaatttaaagatcattcttct
gatttaaaaatgtattcagtcgtcatgacatcaaatggacatttggattcacgaagcagc
ataccaccaccaattatcatgcgtactgctgctacgccaatgccgacaccaaagagttca
ccatgtatggattcagttcatacttacttagaatccagaagaggcagcagtgcttctatt
gatcctacaaattatgaccagaggtctttgtccagcattcgcagttcaccttgtgcccct
tggggcaccaacagtaattggggtagtcgccgctcaagctggcatagtcttggaagggca
cccagcctaaaacggaagaatcagtcagatgaaagggaatccctgctctcgggtgtagga
cgtgaaaattgtggtgaagatgatgaatctgaagatgcaaagtctagcaaagctggcagc
ctcagtggatggtccttgcaccatcgtgctgaattttttgataccaaaggatccatagac
ttgcctgagctacttcaagtaccagtaatgcgacattctgtgacctttaatcctatgtgc
acaacaccttgtgactaccaagattgcaatggcaaatccttgcactttccaaatgagatc
tttcctcgaatggataaccacaaagatgacccaaacgattatgaagatgaaattgatgat
agttactgttttagagtctggcaatttctggagccatacaaaccaacgtggtgtaaaacg
catgaggattgggcactctacttgtttgctcctcaaaaccggttccgcatcatgtgccag
aagatcattgctcacaagatgtttgaccatgtggtccttgtatttatatttctgaattgc
attacaattgctcttgaaagacccgagattgacccaaacagtacagaacggatgtttctg
agtgtctcaaatcatatcttcactgctatttttgttgttgaaatggctcttaaggtcata
gcactaggattcttttctggtgagaatgcctatctccaaagcagctggaatatattggat
ggcatcctagtctttgtttctgtaattgacataattgtctccctggcatcagcaggaggg
gcaaagatccttggtattctccgtgtattacgactcttgcgaaccctacgaccactgaga
gtcatcagtcgagctccaggtctcaaactggtagtagaaaccttaataacttcccttaga
cccatcgggaatatcgtactcatctgctgtgcgttcttcataatcttcggaatcttgggg
gtccagttgtttaaaggcaagttctaccattgtgatggacatgataccaggaatattaca
aataagtcagaatgtgtccaagctaactataaatgggtgcgccgtaaatacaattttgat
aatcttggacaggcattgatgtcactctttgttttatcctccaaagatggttgggtgaat
ataatgtatgatggcctcgatgctataggaattgataagcagccacaaaggaaccacaat
ccctggatgctcttgtacttcatctcctttctcctgattgtgagcttctttgtgttaaac
atgttcgtgggagtagtggtggagaacttccacaagtgccggcagcaccaggaggctgag
gaggcccgccggcgggaggagaaacgtttgcgacggttggaaaaaaagcgcaggaaagcc
caacgcagaccctattatgctgactactccccagctcgactttacatccataagttgtgc
accaaccactacctggatctatttatcacattcattattggtataaatgttatcacaatg
tccatggagcactaccaccagccaccttctcttgaagaagctctaaagtattgtaactac
gtgttcaccatcgtctttgtcttcgaatctattcttaagctcattgcatttggcttcagg
aggttctttaaagacagatggaaccaattggatctcgctattgttcttctctcaataatg
ggaataaccttggaagaaatcgaaattaatgcctccttgcccattaaccccactatcatt
cgcatcatgagagtgctacgaattgcaagagtgctgaaactactcaagatggctactgga
atgcgggctttacttgatacagttgtgcaagctttgccacaggttggaaaccttgggtta
ttgttcatgcttttgttttttatctatgcggctcttggagttgaactctttggaaaactg
gtttgcaacgatgaaaatccatgtgaaggcttgagtcgacatgcaacatttgagaatttt
ggaatggcatttctaactttattccgagtttctactggcgataactggaatggaataatg
aaggatacattgcgagaatgtggcagtgaggataagcactgcctcacctacctccctttc
ttctctcctgtgtactttgtcacttttgttctaatcgctcaatttgtgctcgtcaatgtt
gtggttgctgttctaatgaaacacttggaggagagcaacaaggaagccaaagaggatgca
gagcttgatgcagaaatagagctggaaatgtcacgaacccagggagcatcaactagcagc
attggacaaacccctatccttgacagcagagccacaggagctggccaggagtcagtaaga
cttgaatcaccagtacacgtaaaacaattagtggaagatcctcgatacagcaaaataata
ggagagaatcaaacagaaaatttgcttactgttcggaaagtttctgtgtctcgaatgcat
tccttacctaacgacagctacatgtttcgcccagttagatcagcccaatctcattatccg
ctgcatgaggtggatccccatcaggggtctgtgacttcagtccagtcccagcctgctgaa
gtttctacgtgtcttggagttcccactgaggagtctgccagaaatgactcagtggatgtt
gtgaatgcggaatctaagaacagcttgaagctagagtctaatgacagtctgcaaccaaaa
ctttcacctcatcatatcttggttccaccattaatgtactccactccattgtctccaaag
gtcacccctccgccttcgccactgttgacacaacgcagcaagcaatcgagtgtgcgcaca
cacaggcaggtctacagccagcgcagtatcccaagccgttcgcccagtcacagcagtgac
agcaacagcccagcaagctcctttctcaactctgtggatccagccgatgaagaagtgagg
tacatcaacagctcaatgagaaactggaagcgacagtccgaagtgagaagcctttcatta
tcacctttcctctcgcttaacctgtcgactgtggctttaaagaactctaacagtacagca
agtttgacaggaattggaagggaaaaagacttgaagaagttctatagtgttgacgcgcag
ggattactggcgaagccttcttgggcagacgatctaaggagacattcaattgaaatatgt
ccatcaattgacgatgaagattcaaatctacagttagaagttccattttctactgaagaa
aagcgagagccttctgtccatgtccagtcagattctgagtatatccttgcagctcaaaga
aagaaaaaaatgagtccaccttgtatctcaatagagcctcccatggagagtgaaagtggg
ccaacttctcatactgcagtgtgtgaagccaggatgcatttacgcaagcgcacactatcc
tttgaatccatggctcatagagattctctagaactcggagatttgcagcctgggagtcag
acctcaataacagaccaacgaattccccagccctgtcaaagcaagcatcttaccattcca
gacttatcattcgaccactcagatgtgagttcattaagcagtttatctgacctgttttct
gacagcaatcactcaaccccttcttctagtatctctgcagattcaagggtagaattactg
gcctccaaacggaagaaaatagaccatttaaaagcatcaagtgaaaaccctgatattcat
aggcctgaaaatagtaaagaggtgcttagcgtcaccagtacgcctcttaggaagcggggg
cttgtccgtatgacaagcacacgagaagacacagatgatcttgtggtatag
DBGET
integrated database retrieval system
