Rhincodon typus (whale shark): 109933868
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Entry
109933868 CDS
T06055
Symbol
htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109933868 (htt)
04131 Membrane trafficking [BR:
rtp04131
]
109933868 (htt)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109933868 (htt)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109933868 (htt)
Membrane trafficking [BR:
rtp04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
109933868 (htt)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
109933868 (htt)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
109933868
NCBI-ProteinID:
XP_048450053
LinkDB
All DBs
Position
3:<120714898..120800191
Genome browser
AA seq
1894 aa
AA seq
DB search
TDVTIENNLSRVITAVSHALTSSTSRALILGCCEALSLLSLNYPVCNWCIGWHCGYTTNS
SQASRSHLYKNRGRSFSLSQNSPTDEPRKNCTVGMVNMILSLLSSAWFPLDLSSHQDALV
LSGNLLAAIAPKSLKNPWGNEDDASTTTKPEESWPALADRTLVVMVEQLFSHLMKVINIC
AHVIDDVAPGPVLKATLPSLANTPSLSPIRRKGKEKESVEQATAPMSPKKITESNPAARP
ADAVGAAPASKSTSLGSFYHLPPYLKLHDVLKATYANYKVTLDLQNNNEKFGSFLRGALD
VLSQLLEIATLPDIGKCVEEILGYLKSCFCREPMAATICVQQLLKTLFGTNLASQYDGSS
SNPSKSQGKVQRLGSSNLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEPEQDTSGWFD
VLQKVSSQLKVSLTNVTRHRTDKNAIHNYIRLFEPLVIKALKQYTTTTSVHLQRQVLDLL
AQLVQLRVNYCLLDSDQVFIGFVLKQFEFIEVGQFRESEAIIPNIFFFLVLLSYERYHSK
PIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELDTQKEVVV
SMLLRLIQYHQVLEMLILVLQQCHKENEDKWKRLSRQIADMILPLLAKQQMHLDSHEALG
VLNTLFETVAPSSLRPVDMLLKSMFAMPCTLASAGTVQLWISGILAILRVLISQSTEDIV
LSRVQELALSPYLISCQNITLLRDRGNLTVPPEEQNEDTQSKHLPEETFARFLLQMVGIL
LEDIVNKQLKVDMSEQQHSFYCQQIGTLLMCLIHIFKSGMFRRITAAATRLIVGNGFDGS
FYTLESLNALVQSIIPTHPSLVLLWCQILLLVNYTNYSWWSEVHQTPKRHSLSSTKLLSP
QISENEDSKSVSKLGVCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLINLSH
EPPVQDFISAVHRNSAASGLFIQAIQSRCDNLATPTMLKKTLQCLEGIHLSQSGAVLMLY
IDKLISTPFRVLARMVDTLACRRVEMLLAESLQNSVAQVPREELERIQRYLQTTCLAQRH
QRLYSLLDRFRTTVAADTVSPSPIVTSHPLDGDKLSSMESIIVDKDWYVSLIKWQCCSKL
NTALMECTELLNKLPEDDLRSVMTAKEFNLNLLMPSLAFGLRGISADQTSVLFETARKVT
LDHVAFHVQHLPGKHRVFQRLCPLPHSSYWNKIGELYGDMQFYHSVISLCNAVAQYLLSL
PKLPPALQIPTDKQADIASFMVLSLEALCWQLMHDQVPLSLDLQAALDCCCLVLQQPDIW
NLLASVTYVTQACSVINCIRFIIEAMAVEPGEQLLLHEERRKSNPDETTVVDEESEDVFE
RSKCITKACNVMTEMVECLQTVLSSGHASNTRIPAFLNPTLRNIGISLARLPLVNSYTRT
PPLVWKLGWSPQTGGEFGTTLPEIPVEFLQEKEIFKEFIYRINVLGWTSRTQFEETWATL
LGVLVTQPLAMDQEEEVPQEEDTERTQINILAVQAITSLVLSAMSIPVAGNPATSCLEHQ
PRNKALKALDTRFGRKLSVIRGIVEKEIQAMVSKRDNIATHYPYQAWDPVPSLSHSTSGV
LISHEKLLLQINMEREMGNMDYKLGQVSIHSVWLGNNITPLREEEWDEDEEDESDVPAPS
SPPTSPINSRKHRAGVDIHSCSQFLLELYSQWVLPTNTGKKTPVVLVSEVVRSLLAVSDL
FTERTQFEMMYNTLTELQKIHPAEDEILNQYLVPAICKAAAVLGMDKAIAEPISRLLETT
MRSTHMPSRIGALHGILYILECDLLDETAKQLIPTISVYLLANLRGIAHCVNIHNQQHVL
VMCATAFYLIENYPLDVGHEFTAGIIQVSFTSIT
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
actgatgtgacgatagagaacaatctgtcccgtgtcatcactgcggtgtctcatgcattg
acctcgtctacctccagagcacttatacttggttgctgtgaagctttgtctttgctctcc
ttgaactatcctgtgtgtaactggtgcatcggttggcactgtgggtatacgaccaacagc
tctcaagcatccagaagccatctgtacaagaacagggggcgttcgttcagtttatcacag
aacagtccgacggatgaaccccgtaaaaactgtactgtggggatggtcaatatgatactg
tctctgctttcctcggcctggtttcctttggacctttcctcccatcaagatgccttagtg
ttgtccggaaacctgctggcagctattgcacccaaatcgctgaagaatccatggggcaat
gaagatgatgctagtacaaccaccaaacctgaagagtcatggcctgccttggctgacagg
actttggttgtgatggtggaacaactattctctcacctgatgaaagtcatcaatatctgt
gcacatgtcatcgatgatgttgcacctggtcctgtgttgaaggcaactctcccttcactt
gccaatacgccgtccctcagcccaatcagacgcaagggaaaggagaaggaatcagtagag
caggcaactgcaccaatgagtccaaagaaaattactgaatccaacccagctgccaggcct
gcggatgctgttggagctgcaccagcaagcaagtctacctcgcttggcagtttttaccac
ctgcctccatatctgaagttgcatgatgtcttgaaggcaacgtatgcaaattacaaggtt
actctggatcttcagaacaataatgaaaagtttggcagtttcttgcgaggagctttggat
gttttatctcagcttcttgagattgcaacattgccggacattgggaagtgtgtggaagag
atccttggctatctgaagtcctgtttctgcagggaacccatggcagccactatctgtgta
cagcagttattgaagacgctgtttggaacaaatctagcatcgcaatatgatggctcctct
tccaatcccagcaaatcccaaggaaaagtgcagcgcttgggctcttccaatttgaggcca
ggtctataccactactgtttcatggcaccctatacgcacttcacccaagcactagctgac
gccagtctgaggaacatggttcaagcagaacctgagcaggacacatctggatggtttgat
gtgctgcagaaggtttcttcacaactgaaagtcagcctgacaaatgtaaccaggcatcga
actgataagaacgcaatacacaactacatccgcctctttgagcctctggtcatcaaggcc
ttgaagcagtacaccacaaccacttcagtccatctgcaaagacaagtgcttgatttgttg
gctcagttggtacaactcagggtgaactactgcctacttgattcggatcaggtattcatt
gggtttgttctgaagcagtttgaattcattgaggtgggccaatttagggaatccgaggcc
atcattccaaacatatttttcttcttggtattgttgtcatatgagcgttatcactccaag
ccaatcattggaattcccaaaattatccaactgtgtgatgggatcatggccagcggtcgg
aaagctgttacacacgcaatcccggcactgcagccgatagttcatgatctgtttgtactg
cgagggaccaataaagctgatgctggcaaggaactggatacacagaaggaagtggtagtt
tctatgttgctgagactcatccaataccaccaggtcctggagatgttaattctggtgttg
caacagtgtcacaaggagaatgaggataagtggaaacgtctttcacgccagatagctgac
atgattctaccgttgctggctaaacagcagatgcatctcgattcacatgaagccttaggt
gtgctgaatacactctttgagacagtggcaccctcatcactgcgacctgttgacatgttg
ctgaagagtatgtttgcaatgccatgcaccctggcatcagctggaacagttcagctttgg
atatcaggtatcctagctatcctgcgggtcctcatttctcagtccaccgaggatattgtc
ctgtcacgggttcaagaattggccttgtccccttatttgatttcctgccagaacataacc
ttgttgagggaccgagggaatctgactgtcccaccagaggaacagaatgaagatacacag
agtaaacatctcccggaagaaacttttgccaggttcctgttgcagatggtggggatcctc
cttgaagacattgtgaataagcagttgaaagtggacatgagtgagcagcagcattccttt
tattgccagcagattggcactctgctaatgtgcctcatacacatcttcaagtcagggatg
tttagaagaatcacagcagctgccactagattgattgtggggaacggcttcgatggaagc
ttttacacattggaaagcttgaatgccttggttcaatccataattcccactcacccgtct
ttagtactgctttggtgccaaatcctactgcttgtgaactacacaaactacagctggtgg
tcagaggtgcatcagacaccgaagaggcacagcttgtcgagcactaagttgctgagtcct
cagatatctgaaaatgaagattcaaaatctgtgtctaagttgggtgtgtgcaatagggaa
atagttcgaagaggagccctcattcttttctgtgattatgtgtgtcaaaaccttcatgat
tctgagcacctgacttggctgatagtcaaccatgtccaagatcttatcaatctttctcat
gaacctccagtacaagattttatcagtgctgttcatcgtaactccgctgccagtgggctt
ttcattcaagctatccagtcccgatgtgacaatcttgcaacaccaactatgttaaagaag
accctgcaatgcttggaggggatccacctcagccagtcaggggcagtcttgatgctatac
attgataagctcatcagcacacctttccgagtcctggcacggatggtggacaccctggct
tgccggcgagttgagatgcttttggccgaaagtttacagaatagcgttgcccaagtgccc
cgtgaagagttggaaaggattcagcgttatctacagacaacttgccttgctcaaagacac
caaagattgtactccctactggacaggttccgtacaacagttgccgcagacacagtgagc
ccttctccaattgtgacctctcacccattggatggagataagctgtcttccatggaatct
atcattgtggacaaagactggtatgtctcgcttattaaatggcagtgctgcagcaagtta
aatactgctttaatggagtgcactgaattactcaataaacttcctgaagacgacctccgc
tctgtcatgacagctaaggagttcaacctgaaccttctgatgcccagcttggcttttggt
ttgcgtggaatctctgcagatcaaactagtgtgctttttgaaactgccaggaaagtcacc
ttggaccacgtggcattccatgtccagcaccttcctggcaaacatcgggtgttccaaagg
ctgtgtcctttgccccattcctcctattggaataagattggtgagctttatggggatatg
cagttctatcattcagttattagtctgtgcaatgccgtggctcaataccttctctctctg
cccaaactgccaccagctcttcagattcccaccgacaaacaggctgatattgccagcttc
atggtcttgtctctggaggcactgtgttggcagttgatgcatgatcaggttccattaagt
ctggacttacaagctgctctggattgttgctgcttagttttacagcagcctgacatttgg
aacctgctggcctctgtgacctacgtaactcaagcttgctcagttatcaactgcatccgg
ttcatcattgaagcaatggcagttgagccaggagagcagctgcttttgcatgaggagagg
agaaagtcaaatcctgatgaaactacagttgtggatgaagagagcgaggatgtgtttgag
cgatccaagtgcattacgaaggcctgtaatgtgatgactgaaatggtggagtgtctccag
acagtactgtcctctgggcatgccagcaacacacgaatcccagcattcctgaacccaact
cttaggaatattggtattagcttagccagactgcctctggttaacagctacacccgtacc
cctccattggtgtggaagttgggatggtcaccacaaactgggggtgaatttggtacaact
cttcctgaaattccagttgagtttctacaggaaaaagaaatcttcaaagagttcatctat
aggataaacgttcttgggtggacaagccgcactcagtttgaggaaacctgggcaaccctt
cttggtgttcttgtgactcaaccactagcgatggaccaggaggaggaagttccacaagag
gaggacacagagaggacccagattaatattcttgcagtgcaagcaataacgtccttggtg
ctaagtgctatgtcaattccagtggcaggtaatccagccaccagctgtctcgaacatcag
cctcgtaataaagctctgaaggctctggatacaaggttcgggagaaaattgagtgtcatt
cgaggaatagtggagaaggaaatccaagcaatggtatcaaaaagggacaacatagcaaca
cactacccttatcaagcgtgggatcctgttccatctctctcccattcaacatctggtgtc
ctgataagccatgaaaagcttttactgcagataaacatggaacgggaaatggggaacatg
gattataaactggggcaggtctccattcattccgtttggttaggtaacaacataacccct
ttgagagaagaggagtgggatgaagacgaggaagatgaaagtgatgtgcctgctccatct
tcacctccaacctctccaattaactccaggaagcatcgagctggagtagacattcattca
tgctctcaattcttgttggaactgtacagtcagtgggtccttcccacaaacactggcaag
aaaacccccgttgtcctggtcagtgaagtagtgagatcgcttttggcagtctcagatttg
tttactgagagaacccagtttgagatgatgtacaacactctgacagaacttcaaaaaatt
catcctgcagaagatgagattctgaatcagtatctggttcctgctatttgcaaagcagca
gctgttctgggcatggacaaggccatagcagaaccaataagtcgtctgttagagaccaca
atgcggagtacccacatgccatctcgaataggagcactgcatggaatcctgtacattctg
gagtgtgatctactggatgagacagcaaagcagctcattccgaccatcagtgtttacctg
ctggccaacctgcgtggcattgcccactgtgtcaacattcacaaccaacaacacgtgttg
gtgatgtgtgcaactgctttctatctcatcgaaaactatccgcttgatgtgggccacgaa
tttactgcaggcatcattcaggtatcatttacttctatcacttaa
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integrated database retrieval system
