Rhincodon typus (whale shark): 109933914
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Entry
109933914 CDS
T06055
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03013
Nucleocytoplasmic transport
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109933914 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
109933914 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109933914 (thoc5)
03041 Spliceosome [BR:
rtp03041
]
109933914 (thoc5)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109933914 (thoc5)
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109933914 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
109933914
NCBI-ProteinID:
XP_020388368
LinkDB
All DBs
Position
24:complement(27530775..27562144)
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AA seq
698 aa
AA seq
DB search
MSADSAKKRKTKVIRSDGGTVEKESRKARGDGEQESKVYSEEAEVETRDPAKDYDMYKKT
CEDLQRLMAEIHELKSKGGKDASAEIDERRIQSCIHFMTLKKLNRLAHIRLKKGRDQTHE
AKQKVDALHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVDVEEFYKEAPLDISKPNL
TMSDPHQQTLSRLDWELEQRKRLAEKYKESLANKEKIRKDIEIKKEYLNSLQPRLNTIMQ
ASLPVQEYLSMPFDQAHKQYEIARHLPPPLYVLYVQANSYGQACAQMNKASQPYGRDKNL
TVAIDGDVEEAKALARPPEDSQDDESDSDAEEEQTTTKRRRPTLGLQLDDKRREMLKRHP
LSVTLDLKYKDGSILHLYFYYLMNLNIMTVKTKVTTATEMSIAISAGDLLSPASLLSCLY
PGDHGKKTPNPANYYQFDKVGILTFSDYIGELGHPYVWVQKLGGLHFPKDQPQKFVMADN
SVSASHMETTIKLLRMRLQSRLALQKQFASLEHSIVPISSECQHLFPVKIIARLIKWCAI
SYEDYVALPFTKHVVEADMAQETDLFFSALIERGTAKLHAAIVLNPGYSTIPPIFSLCLN
WKGEKSSRNDDNLKAIEGEVNVCFKELLGPKPGHQLLTNQIQRLCMCLDVYLETETHDNS
VEGPKEFPREKMCLRLVRGPNRIKPFKYNHPQGFFTHR
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctgattcggcgaagaagcgaaaaaccaaagtgattcggagtgatggcggaaca
gtggagaaggagagcagaaaggctcggggtgatggtgaacaggagagtaaagtttatagt
gaagaggcggaagtggagacacgagaccctgctaaagactatgatatgtacaagaaaacc
tgtgaggatctccaaaggttgatggctgagattcatgaattaaagagtaaaggaggaaaa
gatgcttcagcagagatcgatgaacggcggatccagagctgtattcatttcatgactcta
aagaagttaaaccgtttggctcatatcaggttaaaaaagggtcgagatcaaactcatgag
gccaaacagaaagtcgatgctcttcatcttcaacttcagaatcttctctatgaggtgatg
catcttcaaaaggaaatcaccaagtgcttagagttcaaatcgaaacatgaagagattgac
ttggtggatgtggaggaattctataaagaggcccccttagacattagcaagcctaacctc
accatgagtgatccacatcagcagactctgtctcgcttagactgggaacttgaacagcgt
aaaaggttggctgaaaaatataaagaatcactagcaaacaaagagaaaattcgaaaagac
attgaaatcaaaaaagaatatttaaacagtcttcagccaagacttaacactattatgcag
gcatctttaccagtccaagaatatctttccatgccctttgaccaagctcataaacaatat
gaaatagctagacacctgcctcctccgttatatgtgctgtacgttcaggcaaattcatat
gggcaagcttgtgctcagatgaacaaggcctcccagccctatgggcgggataagaatctt
acagtagctattgatggggatgttgaagaagccaaggcgcttgcaagaccgccagaggac
tcccaagatgatgaaagtgactccgatgcagaggaggagcagaccacaacaaaacgtcgc
cgtccaactcttggcctgcaactggatgataaacgcagagaaatgttaaaacggcaccct
ctgtccgttactttagacctaaaatacaaagatggcagtatccttcacctttacttctac
tatttgatgaacctcaatataatgacagtcaagactaaagtgaccacagctactgaaatg
tccatagctatcagtgcaggagatctgttgtctccagcctcattattgagttgtttgtat
cctggagaccatggcaaaaagactccaaatcctgcaaattactatcagttcgataaagtt
ggaatcttaactttcagtgactacattggagagctaggacatccctatgtttgggttcaa
aaacttggaggactgcattttccaaaggatcagccgcagaaatttgtaatggctgacaat
tctgtaagtgccagtcacatggaaactacaataaaattgctacggatgaggttgcagtcc
cgactggctctgcagaagcagtttgcttcactagaacatagtattgtgccgatatccagt
gaatgtcagcatcttttcccagtgaagatcatagctagattgatcaaatggtgtgccatt
tcgtatgaagattatgtggctctgccttttaccaagcatgtcgttgaagcagacatggct
caagagactgatctattcttttcagctttgatagaacgagggacagctaagctccatgca
gcgatagtgttgaatcctggttattctaccatcccccctatcttcagcctttgtttaaat
tggaagggcgagaaatcgagtcgtaatgatgataatctaaaggcgatagagggtgaggtt
aatgtttgcttcaaggaattgttgggtcccaaaccaggacatcagcttctgacaaatcag
atccagcgattatgtatgtgtctggacgtttatctggaaacggagactcatgataatagt
gtggaaggaccaaaggaattcccacgagagaagatgtgtctgcgccttgttagaggtcct
aatcgaatcaagcctttcaaatacaatcatccacagggattcttcacacaccggtga
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