Rhincodon typus (whale shark): 109934024
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Entry
109934024 CDS
T06055
Symbol
msh4
Name
(RefSeq) mutS protein homolog 4
KO
K08740
DNA mismatch repair protein MSH4
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109934024 (msh4)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Meiosis-specific proteins
Others
109934024 (msh4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
AAA_14
AAA_22
SpoIVA_ATPase
AAA_28
ATPase_2
AAA_30
Motif
Other DBs
NCBI-GeneID:
109934024
NCBI-ProteinID:
XP_048457526
LinkDB
All DBs
Position
10:complement(78693281..78795198)
Genome browser
AA seq
864 aa
AA seq
DB search
MFVLAESYFGDKSSNIGNQNLFPSASAQSSSSLKGYDDTRIGKTPASTTSSSRNARPPCK
LRTPQTGHSVTSSSAVSAHVASVIVAVVEGRGLARGEIGMASIDLKSPELILSQFADNST
YAKVITKLQILTPLEIIMPNTACDKGSGTKLFTLITENFKSVALSTVQRKYFNETKGLEY
IEQLCTPEFSTVLMEIQMKYYCLAAAAALLKYVEFIQNTVYAPKSLKVIFKGSEQTAMID
SASAQQLELIINNRDPRNNHTLYGVLNYTKTAGGSRRLRSNILEPLVDVETINTRLDCVQ
ELLENEDLFFSLQSIISRFLDTDQLLSILVQIPKQDTVQAAESKITNLIYLKHTLELVEP
LQGTLKTCKTPLLKAYCSSLEDSRFNLILDQIKTVINDDTRYIKGCLNMRTQKCYAVRPN
INEFLDIARRTYTEIVDDVAGMISQLGEKYNLPLKTSFSTARGFFIQLNCEGASFSNGQL
PSEFMKVTVTKNTYNFTTADLIKMNERCQESLREIYHMTYLVVCKLLSEIYRHIHCLYKL
SDAVSMLDMLLSFAHTCTLSDYVRPEFTDTLAIKQGRHPILEKISMEKPVANNTYISDGN
NFIIVTGPNMSGKSTYLKQIALCQIIAQIGSFVPAEYASFRIADQIFTRIGVDDDIETNS
STFMKEMKEVTYIMHNATDKSLIIIDELGRGTSTEEGIGICHAVCEFLLSFKAFTLFATH
FLEVCQLDALYPNVENNHFEVQHNRSSTGNCSKIVYTYILSKGYTEEKNYGLKAAEVSSL
PPSIVLDAKEIASHITKQIWRKQRNTVESLQQRAMHHLATRLVQTARNSCLDPDRLRMYL
MGLRKRYEADCLAAQQSPQADTSL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttttggcagaatcatattttggtgataaaagttctaacatagggaaccaaaac
ctgtttccgtccgcctcggcacagagcagttcttcactgaagggttatgatgataccaga
atagggaagacgcctgcgtccactaccagcagcagtcgcaatgcaagacccccctgcaaa
cttcgtactccccaaactggtcactcagttacctcttcttcagcagtctcagctcatgtt
gcatcagtaattgtagctgtagtggaggggcgtgggcttgctcggggtgaaataggaatg
gcgagcattgacctgaagagccctgagttaatattgtcccagtttgcagacaactctaca
tacgcgaaggttattaccaagttgcagattttaacaccgttagaaattattatgccaaat
accgcttgtgataaaggaagtgggactaagctgtttactcttatcacagaaaattttaaa
agtgtggctctcagtactgttcagagaaagtactttaatgaaacaaagggactggaatac
attgagcagctttgcacacccgaattcagcactgtgctaatggagattcagatgaaatat
tactgtttggctgcagccgcagccttgctgaagtatgttgaatttatccagaatacagtt
tatgctccaaaatctctcaaagttatcttcaaagggagtgaacagacagcgatgattgat
tcggcctcagctcagcagcttgaactgatcattaacaacagagatccaagaaataatcac
acactgtacggggtcctgaactacacaaagacagctggagggagtcgcagacttcgctcc
aacatcttggagcccctggttgacgtggaaactattaacacaagattggactgtgtacaa
gaactcctggaaaatgaggatctcttcttcagccttcagtccataatttcacggttcttg
gatactgatcagctcctgtctatcctagtgcagattccaaagcaagacactgtacaggca
gcagaatccaagatcactaacttaatttacctgaagcatacgttggagttagtggaacca
ttgcagggaactctgaaaacctgcaagacaccattactaaaggcttattgcagttcattg
gaagatagcagatttaaccttattctggaccaaatcaaaactgtcattaatgatgatacc
aggtacattaaaggctgtttgaacatgaggacacagaaatgctatgctgtcagaccaaat
attaacgagttccttgatattgctcggcgaacgtacacagagattgttgatgatgtagca
ggaatgatatcacagctgggagaaaaatataacctgcctctgaaaaccagcttcagtact
gcccgaggattcttcattcagctgaattgtgagggagcttcattctctaatgggcagttg
ccatcagagtttatgaaggtcaccgtaacgaagaacacttacaacttcactacagctgac
ttaattaaaatgaatgagcggtgccaagagtctttgcgggagatttaccatatgacctat
ctggtagtttgcaaactcctgagtgagatctacagacatatccattgtttgtacaagctg
tcagatgcagtctccatgttggacatgttgctgtccttcgcgcacacctgcactctttca
gactatgtccgtccagagttcactgataccttggccattaagcagggacgacatcctatt
cttgaaaagatatcgatggagaaacctgttgctaataatacctacatctccgatgggaac
aacttcatcattgtaactgggcctaacatgagcggaaagtcaacctatcttaaacagatt
gctctgtgtcaaattatagcacagattggttcctttgttccagctgagtatgcttcattt
cgaatagctgatcagatctttaccaggataggtgtagatgatgacattgaaacaaactca
tcaacctttatgaaggagatgaaagaggtaacatacatcatgcataatgccactgataaa
tctctcattataattgatgaattgggtagaggaaccagtacggaagaaggcattgggatc
tgtcatgcagtctgtgaatttctgctcagtttcaaggcattcacattatttgccactcac
ttcctggaagtctgccagcttgatgctttatatcccaatgtagaaaacaatcacttcgaa
gttcaacataatcgaagcagcactggaaactgtagtaaaattgtctacacgtacatcctc
tccaaaggttatactgaggagaaaaactatggtttgaaggccgctgaggtttcatctctt
cccccatcaatagtactcgatgctaaagaaattgcttctcacattaccaaacaaatatgg
cgtaaacagagaaacactgttgaatcactgcagcagagagcgatgcatcacctagccacc
agactagtgcagacagcaagaaactcatgcttggatccagatcggttgagaatgtaccta
atgggcctccggaaaaggtacgaagcagactgcctcgcagctcaacagtctccacaagca
gatacatccctctga
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