Rhincodon typus (whale shark): 109934178
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Entry
109934178 CDS
T06055
Symbol
atm
Name
(RefSeq) serine-protein kinase ATM isoform X1
KO
K04728
serine-protein kinase ATM [EC:
2.7.11.1
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03440
Homologous recombination
rtp04068
FoxO signaling pathway
rtp04110
Cell cycle
rtp04115
p53 signaling pathway
rtp04210
Apoptosis
rtp04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109934178 (atm)
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
109934178 (atm)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
109934178 (atm)
04210 Apoptosis
109934178 (atm)
04115 p53 signaling pathway
109934178 (atm)
04218 Cellular senescence
109934178 (atm)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rtp01001
]
109934178 (atm)
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtp03032
]
109934178 (atm)
03036 Chromosome and associated proteins [BR:
rtp03036
]
109934178 (atm)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109934178 (atm)
Enzymes [BR:
rtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
109934178 (atm)
Protein kinases [BR:
rtp01001
]
Serine/threonine kinases: Other
PIKK family [OT]
109934178 (atm)
DNA replication proteins [BR:
rtp03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
109934178 (atm)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
109934178 (atm)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
Check point factors
Other check point factors
109934178 (atm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PI3_PI4_kinase
FAT
TAN
FATC
HEAT_ATR
RNase_J_C
Motif
Other DBs
NCBI-GeneID:
109934178
NCBI-ProteinID:
XP_020388600
LinkDB
All DBs
Position
6:complement(41000376..41164805)
Genome browser
AA seq
3060 aa
AA seq
DB search
MSLVLHDLYLCCCQLDNDKTTERKKEVDKFKRLIRTPEVIEQLDRNSESKHPKQLNWDAV
FRFLQRYIQKETECLQAANPNVSATTQANRQKKMQEIGSIMKYFIRWANKRGPRLKCQDL
LKHIKDTLQNKFSCAAYGTDYSSILLKDVLSIRKYWCEISQKQWSDLMNLYFKMFLKPSN
DTNRVLVARIIHTLVRGCCFQSEGLTSGLFEFFAKAMQNARQEQVFAVIEHVMSALNVFL
NVCVMNCRIRVCKLGEEIFPTLLRIWTQKRPQDSLKEEIIEFFRLQLRAHHPKGAKVPEK
GAFAADWLKWQNLLYSLYETIVSEVGHIGSRGKYSGGMRHVAVKDNLVDLAADICHQLFD
QDTRVFVSSVTDVDSAQSPSHQGTPNKRRRVELGWEVVRDGLQKSQSDFDMVPWLQITTV
LVAKYPSSVPRNELVLILTTLHQILSQQRRGEKMPYVLCCLREIAVCQRLKSNLNSAQKL
DLQKLWAKIWAITLRSISSQQTEAESFRLLEAILHGNLTVPDKDFWKIFSSSTCQPSSSA
VKCLSCALAKCTLPEKMDGVAEHYLITTGDRPQTLREAIMRWLLGYRAEEDVEENVELPS
VICRDFPNQLVSQILVVLTLKDCRAGMDFFQSPSPESILAGENPAPEAKDGTVFSESEHL
FLQTTFDETLNYSNTVVLLQNKKSAASRISVKHTLKDKLEEYLLSLMECLHSAAMAPPEC
QVRCANLITGVLQCYSDIGVISEDDACTSVLFQKAKSFILAAGEYISSAKNKLNDKLEGM
KTMVTVCTKCLHSLTKHWAKRSSSVLFLQLFSARFMNDLLQICKQLATYNGKSHDAGEVK
DCIEDSFREAQGSGSGDFFDDNDKTFEVDDYSDSSDSLVVTGAKSILAEENLTKHNFLLL
DILRFLCCCTAAGQMHVLSFRSDDIRRKLLMLIQDTDRSISKSLHLHMYLILLKELPSEE
CVLPADDISILVNPLLDLCSTYRCDQEVCSVILTHILPLLAAQGIDCDEITDVQGKLLTT
IGAFWHLSKEGKCNSQVRTALVRCMKALLEKDPHSKWSVLSIRGEELPVSEVYTEFLKDS
HHQVRMLAAMSVNRLFQEVQVQDESIQLKVLPVKLQQNAFENVYMKVQAGMRFQNSEEEL
QDEQCNRRATLLTVISLIMCCSPICEKQALFAIFQSFKENKLNPTLVKKILETVSNCLKY
RNSESFMVSHLDYLIHQWLRMDDTSYNLSTFPYVLLNCANLEEFCRSHYKILVPHLTVNS
NLEEVKSIAACIKRNWKELLADCLPKIMAYILPCFAYQDKNGSESNMVQQRENASKVFDM
LKEDDCLGKQQIDHLSHNRLPEIVVELLNTLYDPPNQDSGDGTQVVKFSGAMDPAPNPPY
FPSSAIKATLEYISSCHKEKFKSLVAVLSKNPDSIQKILLAISKKAANNSSTYEKHRILM
MYRLFVNLLLKEIKDGLGGVWAFVLRDVIYSLIHHINSWPSHKDDVSTRSFSLCCDLLNV
TCKTAVECCGDALESHLHVIVGTLIPLVHEQPEIRQQALELLKYLVITNQGNENLCKAIR
RLDSFPDLPDFRELRLTQEKIKYSKGKFTLLEEINHFLSVSSCDSLPLTRLVGLKDLKQQ
LELHKEDVKNLLKACQDNPESSVLVNLVVNLLQLCKSASNHPAGKDILEAAGSCLGEVGP
IDFSTITLQHKKDEFLCKATELLKENKFKLIFIILNVINNGLIDQCIEVRFAAATCAKNI
LATQSGHQFWDLSKNDPLGPDPMLMYLQPFRTARRKVQELPVDNNSRPPENLDDGCLWIP
QNGNHDKWLKTLTCTLLDSGGVRSEVLQLVKPICEVKTDVCQMALPYLIHDILLNDDNDN
SWQVLLSSHIQGFFNACCRMGSSTSRSTTPAIVDSETDSLPHGQIDITSRRTMLAVVDYL
RKQKRSQLSTVWDDNFWLDLNYLEVALTAQSCAAHFTALLCAEIYADKIRSEEEELKRSS
NKVARSLNDESSQELTITSLSSKSKEETGIGLQELLIDVYRSIGEPDSLYGCGGGKMLHP
LARIRTYEHEVLWDKALVTYDIEMNLPVSTRQAGIVQALQNFGLCHVLTTYLKGLEAENA
EWCEELQEICFQAAWRNMQWDHAPPCRNESSGPGYHESVYNALQSLKDEEFSAFHEILKF
ARVKEVEELCKGSLESVHSLYPTLCRLQILGELETIGQLLFRSATDNSLNEVHRKWEQQL
QLLKDSDFTFQEPILAMRTVIQEILIKKEMDAQKKDFIKGALTEHLLQMAKLARAARNSQ
LAEKAIFQIKQHNPFGFGISTWQLEEAQVFWAKQEQSLSLDVLKQMIYKLEVNGNESLMP
LYVECLRLCGNWLAETCSESPGTIMQKYLEKAVTLSIQHKDTDHNGKMEAFLSLARFSDA
QYQSIDNYMKSSEFENKRALLKNAKEEIHLIREHKFQTNRYVVKVQRECELDEKAMCALQ
EDRKQFLCKAVENYINCLQSGEEHDMRIFRLCSLWLENSNVPEINNKMKEGAEKIPSYKF
LPLMYQLAARMGTKMPGGQRFHEVLNKLIERTSLDHPHHTLFIILALSNANKDDILGKPE
VLKRGRPTRKEVSHLDQERMDAASRIINTVRKSKAKMVKHVEKLCDALITLANMDASNWK
MERKAIEIPSTQPITKLKDLDEVVIPTMELKVDPSGKYENMITVKSFRSQFRLAGGVNLP
KIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQMCNALLQKNADTRKRKLTIRTYKVIP
LSQRSGILEWCTGTVPIGEYLVNPSEGAHKRYRPKDWSSLDCRKRMSEAQKLSFEGKYQV
FMDVCENFRPVFRYFCMEKFLDAAVWFEKRLRYTRSVATSSIVCYIVGLGDRHVQNILID
KDSAELVHIDLGVAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMR
SSQEALLTIVEVLLYDPLFDWTMNPLKALYLQQRPEEDADLHSTLNSAIAGDESECDGET
TDVKSINKVAERVLLRLQEKLKGVEGGAVLSVGGQVNLLIQQARDPKNLSRLFPGWQPWV
NT seq
9183 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgtacttcatgacctctacctctgctgttgccagttggacaatgacaagact
acagaaagaaagaaagaagtagataaatttaaacgtcttattcggactccagaagtcatt
gagcagttggaccgaaattctgaatcaaaacatccaaaacagttgaactgggatgcggtt
tttaggtttcttcaaaggtacatccagaaagagactgaatgcctgcaagcagccaacccg
aatgtgtcagcaactacccaagccaaccgacagaagaaaatgcaagaaattggcagtatc
atgaaatattttatccgatgggccaataaaagaggaccacgtcttaagtgtcaggatctt
ctgaagcacatcaaggatactctgcagaacaaatttagttgtgctgcttatggaactgac
tacagcagcattctgctgaaggacgtcctctcaattaggaagtactggtgtgaaatttcc
caaaaacagtggtcagatttaatgaacttgtacttcaagatgttcctgaaaccgtctaat
gatactaatcgggttcttgtggccagaataattcatactcttgtcagaggctgctgtttt
cagtctgaaggactgacctctggactgtttgagttctttgcaaaggcaatgcagaatgca
agacaagaacaagtttttgctgttatcgaacacgtaatgtcagccctcaatgtttttctc
aatgtgtgtgtaatgaactgtcgtattcgtgtgtgtaaactgggggaggagatatttcca
acactgctgcgcatttggactcagaagcgaccccaggattccctaaaggaagaaatcatt
gaattcttccgattacagcttcgagctcatcatccgaaaggggccaaagtgccggaaaaa
ggtgcttttgcagctgactggttgaaatggcagaacctgctttatagtctttatgaaaca
attgtcagtgaagtgggccacataggaagcagagggaaatactcaggagggatgcgccac
gttgccgtcaaggataacttagttgatctggctgctgatatctgtcatcagttgtttgat
caagataccagggtgtttgtgtcttcagtaacagatgttgattcagcacaaagcccctct
catcagggaacgccaaacaaacgtcgacgtgttgaattaggctgggaagtggtacgagat
ggtctgcaaaaatcacagagtgattttgatatggtaccttggttacaaatcaccacagtt
ctggttgcaaaatatccgtcaagtgtaccccgcaatgagcttgttctcattctgaccacc
ttgcaccagattctctctcagcagagacgtggagagaaaatgccttatgtcctttgctgt
ctgcgtgagattgctgtgtgccagagactaaagtcaaacttgaatagtgcgcagaaatta
gacctgcagaaactctgggccaagatctgggccatcacacttcggagcatcagctcacaa
cagactgaggctgaaagctttcggctgctggaggctattcttcatggaaacctgactgtt
ccagacaaggatttctggaaaatcttttcatcctccacatgccaaccatccagctccgca
gttaaatgtctctcatgtgcattggcaaaatgcactttaccagaaaaaatggatggcgta
gctgaacattatctaataactaccggtgacagaccacagactctcagagaagcaataatg
aggtggctactgggataccgagcagaggaagatgttgaagaaaatgtggagcttccatct
gttatctgcagagattttccgaatcagcttgtttctcaaatattggttgttctgacgctg
aaggactgcagagcggggatggatttctttcagtcaccttcgccagagagtatcctagca
ggagaaaatccagctccagaggccaaggatggcacagttttttcagaatctgagcacctt
ttcctgcaaacgacatttgatgaaactctaaactacagtaacactgtagtattacttcaa
aataagaagtctgctgcatcaagaataagtgtcaaacatactttgaaggacaaactggag
gaatatctgttatcattaatggaatgtctgcattctgctgcgatggctcctccagaatgc
caggttcgctgtgcaaacctcatcactggtgtgctccagtgttattctgatattggtgtc
atcagtgaggatgatgcatgtacatctgttctgtttcagaaggcaaagtctttcatactg
gctgccggcgaatacatttcgtcagccaaaaacaaacttaatgacaagctagaaggcatg
aaaactatggttactgtgtgcaccaaatgtctacactctctcactaagcactgggcaaag
agaagctcatctgttctcttccttcaactattctcagcaagatttatgaatgatctattg
cagatttgtaagcaactggcaacctacaatggaaaatctcatgatgctggggaagtcaag
gattgtattgaagacagttttagggaagcacagggaagtggatctggagatttttttgac
gataatgacaaaacctttgaagtagatgactatagcgacagcagcgattcgctggtcgtg
acaggagcaaagagcattttagctgaagagaatttgacaaaacacaattttcttctcctt
gacattctccgatttctctgctgttgcacagcagcaggacagatgcatgtgctttctttc
aggtctgatgatattcgaagaaaactgttaatgttaattcaagatacagatcgtagcatt
tcaaaatctctgcatttgcacatgtacttgatcctgctaaaagagcttccatcagaagaa
tgtgttctcccagctgatgatatctccatacttgtgaatcctctcttggacttgtgttcc
acgtatcgttgtgatcaagaagtttgttcggtgatcctgacacatattcttcctttgctg
gcggcacaaggcattgactgtgatgaaattactgatgtccaagggaaactgctaacgaca
attggagcattctggcatctaagcaaggaaggaaaatgtaactcacaagtgaggactgct
ttagtaagatgcatgaaagcattacttgagaaagacccacattccaaatggagtgtactc
tctatcagaggagaagagttgcctgtctcagaagtctatacagagttcctaaaagatagt
caccatcaggttcgcatgcttgctgccatgtctgttaacagactattccaagaggtccag
gtacaggatgaatctatacaactgaaagtcctccctgtaaaattgcagcaaaatgccttt
gaaaatgtgtatatgaaagtacaagcaggaatgagatttcagaatagcgaagaggaactc
caggatgagcagtgtaacagaagagctactctgcttacagtgatttcattgatcatgtgc
tgtagccccatttgtgaaaagcaagccttatttgcaattttccagtcattcaaggagaac
aaattgaatcctacgcttgttaaaaaaattcttgagactgtatcaaactgtttgaagtat
cgtaattcagaaagcttcatggtttcccacttggactaccttatccaccaatggctgaga
atggatgatacaagctataacttgtctacattcccttatgtcttattgaactgcgccaat
ctggaagaattttgcagatcccactacaaaattcttgtgccacatctaacggttaatagt
aacttggaggaagtgaaatcaattgctgcatgcattaagaggaattggaaagaattgctt
gctgattgccttccaaagatcatggcttacatcctaccgtgctttgcatatcaagataaa
aatggatctgaaagtaatatggtacagcaaagggaaaatgcatcaaaggtgttcgacatg
ttgaaggaagatgattgcctagggaagcagcaaattgatcatttgagtcacaacagattg
ccagagattgttgttgagctactcaatacactgtatgaccctcccaaccaagattcagga
gatggtacacaagtggtaaagttttcaggtgcaatggatcccgcacctaatccaccttat
tttccatcttctgcgattaaagctacattggaatacattagtagttgccacaaagaaaaa
tttaagtcacttgttgcagttctttcaaaaaacccggattcaatccagaaaatcttgctg
gcaatttctaagaaggcagcaaacaacagtagtacctatgaaaagcaccggatcctgatg
atgtatcgtttgtttgtaaacctgctgctgaaagagataaaagatggcctgggaggagtg
tgggcatttgtccttcgtgatgtcatctatagtctgatccaccatatcaatagctggcca
tcacacaaagatgatgtatctacacgcagcttttctctgtgttgtgacctcttaaatgtt
acttgcaaaactgctgtagagtgctgtggagatgcacttgaaagccaccttcatgttatt
gtcggcacacttataccactggttcatgagcagccagagattcgccagcaggcgctagaa
ttgttgaaatatctagtgataacgaatcaaggcaatgagaacttgtgcaaagcaattagg
cgtttagattcattccctgaccttcctgacttcagagagttgcgcctcactcaggagaaa
atcaaatacagcaaaggaaagttcacattattggaggaaatcaatcacttcctttcagtc
agctcctgtgattcgttgccattgactaggctcgtgggattaaaagatctgaaacaacag
ctggaattacacaaagaagatgttaaaaatctgttgaaagcgtgtcaagataatcccgag
tccagtgttctggtcaacttagttgtgaatcttttgcagttatgcaagtctgcctctaac
caccctgctggaaaagatattcttgaagctgcagggagttgcttaggagaagtgggtccc
attgacttttccaccattactttacaacacaagaaagatgaatttctttgcaaagcaacg
gaactgcttaaagaaaacaaatttaaattaattttcattatcttaaatgtaataaataat
ggcctcattgaccaatgtattgaagtgcgttttgcagctgctacttgtgcaaagaatatt
ctagctacacaatcaggtcaccagttctgggacctaagtaaaaatgatccacttggtcca
gatcctatgctgatgtacttacaacctttccgaacagccagaaggaaggttcaggagctg
ccagtagacaacaattctagaccacctgaaaatctcgatgatggctgcttgtggatacct
cagaatggaaaccatgacaaatggctgaaaactctgacttgcacattgctggacagtgga
ggtgtgagaagtgaagttctacagctagtaaagccaatctgtgaggtgaagactgatgtc
tgccagatggcccttccatacttgatccatgatatcctccttaatgatgacaatgataac
tcctggcaggtgttattatctagccatattcaaggattttttaatgcatgctgcagaatg
ggatcaagcactagccgatccaccactccagccattgttgactcagaaacagacagcctt
ccccatggacaaatagacataacgtctcggcgcaccatgctggcagtggtcgattacttg
cgaaagcaaaaaaggagccaactgagcactgtgtgggatgacaacttctggttggatctg
aactacttagaagttgctttaacagctcaatcatgtgcagctcacttcacagccttgtta
tgtgcagaaatctatgcagataaaatcagatctgaagaagaggaattgaaaaggagttct
aacaaagtggctcggagtctaaatgatgagagcagccaagaactaacaatcaccagcttg
agcagcaaaagcaaagaagaaacggggattggtttacaggaactcctgattgatgtgtac
agaagtataggagaacctgatagtttgtatggctgtggtggagggaagatgttgcaccca
cttgccagaattcgaacgtatgaacatgaggtgctatgggacaaagctcttgtaacatat
gatattgaaatgaatctccctgtctctacacgtcaagctggtattgtccaggctttacag
aactttggattgtgccatgttctcactacatatctaaagggacttgaagctgaaaatgca
gaatggtgtgaggaattgcaggaaatctgtttccaggcagcctggagaaacatgcagtgg
gatcatgcccccccatgcagaaatgagtcttcaggacctggatatcatgaatctgtgtac
aatgcattgcagtctctcaaagatgaagaattttctgccttccatgagattttaaagttt
gccagggtgaaagaagttgaagaattatgcaaaggaagcctggagtcagttcattctctg
tatcctactctgtgtagattgcagatacttggagaactggaaaccattgggcaactgttg
ttcagatctgcaacagataattcattgaatgaggtgcacagaaaatgggagcaacaactt
cagcttctcaaagacagtgactttaccttccaggagcctatcttagccatgaggacagtt
attcaggagatacttatcaaaaaggaaatggatgctcaaaaaaaggatttcattaagggt
gctctgactgagcatttacttcagatggcaaaattagcacgagctgcaagaaattcccag
ctggcagagaaagccatcttccagatcaagcaacacaatccatttgggtttggcatttcc
acctggcaattggaagaggctcaggtcttctgggctaaacaggaacagagtctttctctt
gacgttctcaagcagatgatttacaaattagaggtaaatggcaatgagtcattaatgcca
ctgtatgttgagtgcttgagactctgtggcaactggttggcagaaacatgttcagaaagt
cctggcaccatcatgcaaaaatatttagaaaaggctgtaactctcagtattcaacacaag
gacacagatcacaacgggaagatggaggcatttttatcactggcacgtttctcagatgca
caataccagagtattgataattatatgaaatcatctgagtttgaaaacaaacgtgcactt
ctcaagaatgccaaagaagaaatccatttgatcagagaacacaaatttcaaactaacaga
tatgtggtgaaagtacagcgagaatgtgaattagatgaaaaagcaatgtgtgcgttgcaa
gaggatcgcaagcagtttctgtgtaaagcagtggagaactacatcaattgcttgcagagt
ggagaggagcatgacatgcgtatctttagactgtgctctttgtggcttgaaaattcaaat
gttccagaaataaacaacaagatgaaggaaggtgcagaaaagattccatcttacaagttt
ttacctttaatgtaccagctggctgctcgaatgggaacaaagatgccaggagggcaaagg
tttcatgaagtgttaaacaagctaattgaaagaacttcattggatcaccctcatcacaca
ctatttattatcttggccttatccaatgcaaacaaggatgacattcttgggaaacctgaa
gtgctaaagagaggaagacctacaagaaaagaggtgtcccatctggatcaggaaagaatg
gatgctgctagcaggataataaatacagtacgaaaatctaaagctaaaatggtgaagcac
gtcgagaaattatgtgatgccttaatcactcttgcaaacatggatgccagtaattggaag
atggaaagaaaagctattgaaatcccttccacacaacctatcacaaaattaaaagatctt
gatgaagttgttattcccaccatggaactcaaggttgatccatctggaaaatatgaaaat
atgattactgtgaaatcattcaggtctcagtttcgcttagcaggtggagtgaatcttccc
aaaattatcgattgtgtagggtcagatgggaaagagagaaggcagcttgtcaagggccga
gatgacctgagacaggatgctgtaatgcaacaggtttttcagatgtgtaatgcactttta
caaaagaatgcagataccagaaagaggaaactgactatccgcacatacaaggtcattcct
ctttcccaacgaagtggcattctagagtggtgtacaggaactgtacccattggggaatat
ctggttaatcccagtgaaggagcccataaaaggtatcgacccaaagattggagcagtcta
gactgcaggaaacgaatgtcggaagcacagaaactaagctttgaaggtaaatatcaagtc
ttcatggacgtctgtgagaatttccggcctgttttccgatatttttgcatggaaaagttc
ttggacgcagctgtttggtttgaaaaacggctcagatacactcgaagtgtagccacttct
tcaatagtttgctacattgttggtcttggtgacagacacgtacaaaatatcctcattgac
aaggattcggctgaacttgttcatatagatttgggggttgcatttgagcaaggaaaaatt
cttcctactccagagacggttccattccgactgacccgggacatagtagatggaatgggt
atcactggtgtggaaggtgttttcagaaggtgttgtgaaaagacaatggaggttatgaga
agttcacaagaagctttattaactattgttgaggtgctgttgtatgaccctctttttgac
tggaccatgaatcctttaaaagcactctacctacagcagagacctgaggaagacgcagac
ctccattccacactgaactcggctatagcaggagatgagtcagagtgtgatggagaaacc
actgatgtcaaaagcatcaataaagtagcagaacgtgtacttctaaggctacaggagaag
ctgaagggagttgaaggtggtgctgtcctcagtgtgggtggacaggtcaatctcctgata
cagcaagccagagatcccaagaacctcagtcgattatttccaggatggcaaccttgggtg
tga
DBGET
integrated database retrieval system
