Rhincodon typus (whale shark): 109934829
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Entry
109934829 CDS
T06055
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04120
Ubiquitin mediated proteolysis
rtp04137
Mitophagy - animal
rtp04144
Endocytosis
rtp04340
Hedgehog signaling pathway
rtp04350
TGF-beta signaling pathway
rtp04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109934829
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
109934829
04350 TGF-beta signaling pathway
109934829
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109934829
04137 Mitophagy - animal
109934829
09144 Cellular community - eukaryotes
04520 Adherens junction
109934829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109934829
04121 Ubiquitin system [BR:
rtp04121
]
109934829
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109934829
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
109934829
Membrane trafficking [BR:
rtp04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
109934829
Autophagy
Mitophagy
Other mitophagy associated proteins
109934829
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
HECT type E3
109934829
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
109934829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Motif
Other DBs
NCBI-GeneID:
109934829
NCBI-ProteinID:
XP_048467042
LinkDB
All DBs
Position
23:6575196..6593422
Genome browser
AA seq
373 aa
AA seq
DB search
MSCDFYNICPFLAVGFFFAIAQFPQSSDQESYRQVMKMRPKDLWKRLMVKFRGEEGLDYG
GVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVF
HGHYIDGGFTLPFYKQLLGKSITLDDMESVDPDLHNSLVWILENDITGVLDHTFCVEHNA
YGEIIQHELKPNGKSIPVTEETKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLK
TFDEKELELIICGLGKIDINDWKSNTRLKHCTPDSNIVKWFWKAVESFDEERRARLLQFV
TGSSRVPLQGFKALQGAAGPRLFTIHQIDASTNNLPKAHTCFNRIDIPPYENYEKLYEKL
LTAIEETCGFAVE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgagttgtgatttctacaatatttgtccattccttgctgtaggattcttctttgccatt
gcacagtttccccagagtagtgaccaggagtcttataggcaagtaatgaagatgagacca
aaagatttatggaaacgattaatggtaaaattccggggtgaagaaggattagattatgga
ggcgttgctagggaatggctttatcttctgtctcatgaaatgttgaacccatactatgga
ctcttccagtactccagagatgacatctatacattacagatcaatccagactctgcggtc
aatcctgaacacttgtcttatttccattttgttggtcggattatggggatggcagtgttt
catggacactacatcgatgggggcttcactcttcccttctataaacagctgctgggaaag
tcgatcacactggacgacatggagtctgtggacccagatctacacaacagcttagtctgg
atccttgaaaatgacatcacaggtgtcttggaccacacattctgtgtggagcacaatgcc
tatggagaaatcattcaacatgaactaaagccaaatgggaaaagcattcctgtaacagag
gagaccaagaaagaatacgttcggctatatgtgaactggcgatttctgcgaggtatcgaa
gcacagtttcttgctctgcagaaaggattcaatgaggttatcccacagcatctgctgaaa
acatttgatgagaaggagttggaactaattatctgtggacttggcaagatcgatattaac
gactggaaatcaaacactaggttaaaacactgtacaccagatagcaatattgttaagtgg
ttctggaaggcagtggagtcttttgatgaagaaaggcgagcccgattactccagtttgta
acaggatcctctcgagtgcctctgcagggttttaaagcattacaaggtgcagcaggtcca
aggctcttcaccattcaccagattgatgccagcaccaacaacctccccaaagcacatacc
tgctttaatagaattgacattcctccctacgagaactatgaaaaactctatgagaagctg
ctaacagccattgaagagacttgtgggtttgctgtggagtga
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