Rhincodon typus (whale shark): 109934969
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Entry
109934969 CDS
T06055
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109934969 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109934969 (cpsf2)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109934969 (cpsf2)
U7-dependent histone pre-mRNA processing factors
109934969 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF100_C
RMMBL
Beta-Casp
Motif
Other DBs
NCBI-GeneID:
109934969
NCBI-ProteinID:
XP_020389242
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Position
8:complement(24999847..25017628)
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AA seq
499 aa
AA seq
DB search
MSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARVPSPKVVLASQSDMECGFSRDLFIQWC
QDPKNSVILTYRTTPGTLARYLIDNPNTKKMDIEIRRRVKLEGKELEEYLEKEKLKKEAA
KKQEQEKERDVDSSDESDVEEDMDQPLTGKTKHDLMMKSESSRKGSFFKQAKKSYPMFPA
AEERMKWDEYGEIIRAEDFLVPELQAAEEEKSKLDSGLSNGEEPMDQDLSDVPTKCISAL
ETIEIRARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPESSQDLAESCKAFGGKDI
KVYTPKLQETIDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGV
ILEEGELREDEEGEMQVDAPSSTHNSDQVAAQQKAMKSLFDDDEKETNEDLDVIPTLEPL
SPNEVPGHQAVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGC
LCEDYYKIRDLLYEQYAIV
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaagttaatgagatgttttgaagacaagcgaaacaatccctttcagtttcgt
cacctttctttgtgccacagcctatcagatctagccagagtgcccagtccaaaggttgta
ttggccagtcagtcggacatggaatgtgggttttcacgtgatcttttcatacaatggtgt
caggatccaaaaaattctgtgattctcacttacagaacgacacctggaacactggcacga
tatttgatagacaatcctaacaccaaaaaaatggatatagagattagacgtcgtgtaaaa
ttagaagggaaagaattggaagagtatctagagaaagaaaagctcaagaaagaggcagct
aaaaagcaggaacaagagaaggagcgagatgttgactccagtgatgagagtgatgttgaa
gaagacatggaccaacctttgactggaaaaaccaaacatgacctcatgatgaaaagtgag
agcagtcgcaaaggaagctttttcaaacaggctaaaaaatcataccctatgttcccagca
gcagaggagagaatgaagtgggatgaatatggagaaataataagagctgaggattttttg
gttccggaacttcaagcagcagaagaagaaaagagcaagctcgattctggtctgagtaat
ggtgaggaacctatggatcaggatttatctgatgttccaacaaagtgtatctcggcttta
gaaaccatagaaatcagagccagagtgacatatattgattatgaaggtcgctcagatggt
gactctattaaaaaaattattaatcagatgaaaccccgacagttgattattgttcatggg
cctccagagtccagccaagatctggctgaatcgtgcaaagcgtttggcggaaaggacatt
aaagtttacacaccaaaacttcaagaaacaatagatgctaccagtgagacgcatatctat
caggttagactaaaagattctttggtcagttctctccagttctgtaaagcaaaggatgca
gagttagcttggatagatggtgttttggacatgagggtatcaaaggttgatacaggggtc
attctggaagagggcgagttaagagaggatgaagaaggagaaatgcaggttgatgctccc
tcatctacacataactctgaccaagttgcagctcagcaaaaagctatgaagagccttttt
gatgatgatgaaaaagagaccaatgaagatcttgatgtaattcccacactggaaccattg
tcaccaaatgaggttcctggtcatcaagcagtcttcattaatgagccaaggttatctgat
tttaaacaagttctcttgcgagaaggtattcaagcagaatttgttggaggtgttttggtt
tgcaacaatttggtcgctgttcgaagaactgagacaggacgtattggactagagggatgt
ttatgtgaagattattataaaatacgggaccttttgtatgaacaatatgcaattgtgtaa
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