Rhincodon typus (whale shark): 109935022
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Entry
109935022 CDS
T06055
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109935022 (setx)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109935022 (setx)
5.6.2.5 RNA 5'-3' helicase
109935022 (setx)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109935022 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
UvrD-helicase
AAA_30
AAA_22
NAT10_TcmA_helicase
AAA_16
zf-C3HC3H_KANSL2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
109935022
NCBI-ProteinID:
XP_020389288
LinkDB
All DBs
Position
28:30583381..30696828
Genome browser
AA seq
2795 aa
AA seq
DB search
MNTCCWCTPQGKTRLQFLHLYSSEELPQQEFQAANEDLCFCLECVVDYHQARDQLPSVHK
NLWKLETKRLIEHFENALKEEQEEDDELFLIEDEQEIQLRGYTGPDFENNLRVPILEILK
YPYLLLHERLSELCVEALCKMEQVNFSFQTFEKYPGIYLLLVHPNETIRRWAILAAKSLG
KVERDDFYDLQEVITCLLKVIELDLFENADFYNSSGIEEGKMILLPPHLYEVTNHKTYWL
GICMLLMVLDEQAMDSLLLAQDKQNDFMMSILNTMMKSKPDDDSDPFWPALQCFMVILDR
LGSKVWAQLIDPTEAFQAIIGSQSYNNEIEKIRNTRTNTKVKCDIDDDDNMVSCSQIVYD
YNSKRESKDPGWKNAICPDYYPNMYDEMQTLVNVLQCDIGQDMRVHNSTFLWFIPFVNSV
MDLKDLGIAYIGEVVHHIYSEIKDVLNRKVDFCDKVTEFFILILVSVIELHRNKNHLHLL
WYSSQKWVEVLVKCAMLPARVFKQNNEKAAGTSNVKVTSTTFVAMSSTACSSITNSVQQA
CVQLIRSFLKEGCQSRQRDVFQQFLDKLNRQLRSTFILGWQLSPKEQQELQSCLTHLVKN
TKNKTTEMKQMGTIGRGGGLKDPLIKCEKEDPGDWGKMPACYNSDPGPPTPSILKLECKS
SAIHQSTPNQEEMALENGPKDSYQEAVVPFKAEFTLYDNSTFLNKINIDVSNTRAEEELP
TCVTKMETSPPFPSHSLENVTVGDPQSRSRQIREQGSGPTPTSSSDVDVSTSSLQKSNLQ
AEPLEITHNVPPKEKWKRSMLLVFQESTNKNSAKPEVVSFEKDQHVISHVPSTSDHAETG
CDLPQKSESVSAGPSKFKIDPNKLLNLKVKMQTINLKTKEINNSSSKETTFEKLPNAGAD
NRQLDKMNNRNSSQVPNFSRNQIKDDESTESLLSSQVRAAQSSPISDKRTKSQSSDGLLF
SPITESSSASKSPGPPNPLHHCPSSSSDSYDDIPFNILRLKLKRGISLTSKVDNDLVKPS
LTTSTVGTNLFSELPTQLDTIQSLSKVDRKVKAFCQVPLLNSIQNKENYESDSSMDEPTK
DNNAEFITISDSESLEESTNSLIVPTSKTEKKDNAASLQSVSDILEENQTSLQEMPMNNK
SPSVFEENDSQFFEFESEEQVYSVWEDPQAQHEKADDRKKTELVDEFHVQSDEEEINGML
NEWGYDTDYVSDELIEKVAEEVEASLKGEQKLKQSSLDTEKQLSLRVSSPSSSTAKGTLV
DKSSVPHSGFTAGTASDPQNEKAICSKNIISNTNSHRCLIRSDKNKQTSKSTKNLPDCQL
ENQLTVKNKADKARFKRNLSSSNVRAGEKQLSKATLSKDSSKSTVNQQSHCNGPDQKSRF
ENGLNKNSEEKGCLMSLFNVSKSSARDVQKEFPSTSVKHHSSSLPKKVRRRPEPTSTVEK
LGLKKKIRKAFDLSQGSLDTLTELRNYGQRKGTIEHKHSKKAKLISPQKLTVHTNQRLLV
SQDRQYLRQSKLRLNNNEKKRKCTSTHDESAFPKRTLSTEGSSNSLSACVQRSQKHKSTS
VETDNTCVAAGTLLEKQCSKTIDMASSEQKLSSIHAVDDLNLILRDPLAKDVSADESLED
NELMLTQRDPIDMDIDDDNTEEEDSRKAPSNANETRCQYTGCSDTIISSEKFCKQHSLSD
PKDIFPKPGLPLSIQKSSKPATTKLFASSSTSRNAQLATEMQSVPKRPGGSASKVQQVQR
PSVANLVPLTSKPTPITKTVETPNVLRTLNKDHNFRPQPSFQTSVPALPSNAPLPPGKSM
QTSPSINLDLTEHHYRDQSYLINAVLKWDYQMFDSLDQFGVPDSLCEIPPREVPERFRSY
EEYFQTFYPLLMLNLFEQLAQKLKESKQTNRVIQNFLTLKNYRVVGRIYCAEFQVSLRDH
EIEKQLHPKEDDVVFLWLPQNQNYYMQEEGEIMSNNPVPHISHISRISRISTGRDSLTTL
HLSIRTRGNVSAVKNQPVRCGVIGSLVTTLRQFKGLLFLAKTPLIRPILSANSAYFIQRD
LVECPKLNNAHDYNEHQQKAIHVAYAMAKQPRIPNICLIQGPPGTGKSKTIVGFLHHLLN
EEQENVKPSDGRNIRTKRTRILVCAPSNAAIDDLMKKIIVDFKSKCKDKNNTLGNCGDVN
LVRLGPERAIHSDVLKFSLDYQVNHRIKKGQSDADQVIQRRKDWLDRKLDELGKKCAIIK
KDKEQIEVATREKRKLEKEREELGRKLKELRGRTQDIQLNIILESHIICCTLSTCGIMLL
EMSFRKLGHEPFSCIVVDEAGQACETEILIPLIYRCPKLVLVGDHEQLPPTIISMKAKEL
RYGRSMMCRLQKCLHDEVKRTNSGQSPVTMLLTQYRMHPDICLFPSKYIYRSLLKTDEMI
EMQRCSLTWPFQSYMLFDVTDGYECRERDSYVNTQEVKLVIALISMIAEKQKGICRNIGV
ITPYNAQKQKIMNQIDQELRTAGLEQGRSVQVGTVDGFQGCEKDCIIVTCVRAGNFQGSI
GFLADRQRLNVTITRARLSLFILGNLKTLMENKDWKALIQDAQKRGAIVKTSESDYKKDC
QKILKPRPAFQRNISDPDALMGEQKQVPGLAQKSSWNETSTRSAADVSSGQFPKTPIPSQ
SVVSKHHLHNAQSSVTAQPETSGRSELSTQAIPRDPRLARKALLPETQPQLKVSHTFAES
HVVNPPDSCASGSGHWTIHSSHFSQPPRNSLSRIGDDKPNDSTLSRSLSFSSGTSVCRND
QNRAYSVNICAGSRKQLQDEKAKEDWSGEQKQRHK
NT seq
8388 nt
NT seq
+upstream
nt +downstream
nt
atgaacacttgttgttggtgcacacctcaaggcaagacaaggcttcagtttctacatctc
tacagttctgaggagctccctcaacaggaatttcaagccgccaatgaagatctttgtttt
tgcctggaatgtgtggtggactatcaccaagcacgtgatcaacttccatcagtacacaag
aatttgtggaaactagagacaaaacgtctgattgagcattttgaaaatgccctgaaagaa
gaacaggaggaagatgatgagttgtttctaattgaggatgagcaggaaattcaactgcgt
ggatacacaggaccagactttgagaataacctaagggtacccattctggagattctgaaa
tatccttacctactgcttcatgaacggctaagtgagttatgtgttgaggccctctgtaaa
atggagcaggtgaatttctcctttcagacatttgaaaagtatcctggtatctacctgctt
ctagtacatccaaatgaaacaatcaggagatgggcaatccttgctgctaaatctcttgga
aaggtggaacgagatgatttctatgacttgcaggaagtgattacttgtctactaaaggtc
attgaactggatctttttgaaaatgcagatttctataacagttctggaattgaagaggga
aaaatgattcttttaccaccccatctttatgaagttaccaaccacaagacctactggctt
ggtatctgcatgctgttgatggtgttggatgaacaagctatggactcattactacttgcc
caagataaacagaatgacttcatgatgtcaattctaaacaccatgatgaaaagtaagcca
gatgatgattctgatccattttggccagctctgcagtgcttcatggtaattcttgatcga
cttggatcgaaagtctgggcccaactcattgaccccacagaggcattccaggccattatt
ggtagccagagttacaacaacgagatagaaaaaattcgtaataccagaactaacacaaag
gtaaagtgcgatatcgatgatgacgacaacatggtttcatgcagccagattgtgtatgac
tacaactcgaaaagggaaagcaaggatcctggttggaagaatgctatctgcccagattac
tacccgaacatgtacgatgaaatgcaaactctggtgaatgtgctacaatgtgatattggg
caagacatgcgtgtacacaacagtacctttctgtggttcatcccatttgttaactctgtc
atggacctaaaggatcttggcatagcctacataggagaagttgttcaccatatttactca
gaaataaaggatgtcttgaatcggaaggtggatttctgtgataaagtgactgaatttttc
atccttatcttggtatcagtcatagaactccacaggaataaaaaccatctccatttgctg
tggtacagctcacagaagtgggtggaagtgctggtgaaatgtgccatgcttcctgccaga
gtgtttaaacaaaacaatgagaaagcagcaggaacaagtaatgtcaaggtcacatcaacc
acgtttgtagcaatgtcttctacagcatgttcgagtatcactaactcagtccaacaagca
tgtgttcagctaattcgtagttttctgaaagagggatgtcagtcacggcaaagagatgtg
ttccagcaatttctagacaaactaaatcgacagttgcgaagcacttttatcctaggctgg
cagctaagtcccaaagaacaacaggaattacaatcctgtttaacacacttagttaaaaat
acaaaaaataagaccactgaaatgaagcaaatgggcacaattggaagaggaggtggactg
aaggaccctctgattaaatgtgaaaaagaagacccaggggactggggaaaaatgcctgca
tgttataacagtgaccctggtccaccaactccttcgatattaaaattagagtgcaaaagt
tcagctattcaccaaagtaccccaaatcaagaagaaatggctctagaaaatggacctaaa
gactcgtatcaagaagcagttgtcccatttaaggctgagttcaccttgtatgacaacagt
actttcctaaataagatcaacattgatgtttctaatacacgtgcagaagaagaattgcct
acatgtgtgaccaaaatggaaacctctcctccctttccgtcccattctttggaaaatgtt
acagtcggtgacccacagagcagatcgagacagattcgagaacaaggcagtggacctaca
cccacatccagttctgacgtggatgttagcacaagttctctgcagaaaagtaatttgcag
gctgagcctcttgaaatcactcacaatgttccacctaaagaaaaatggaaacggtctatg
ctattagtgtttcaggaatctacgaacaagaattctgcaaaacctgaagttgtctctttt
gaaaaagatcagcatgttatttctcatgtcccttcaacttctgatcacgcagaaactggt
tgtgatctgcctcaaaagtcggaatcagtcagtgctggaccgagtaagtttaagattgat
ccaaacaaactcttaaatctgaaggtaaagatgcaaacaattaatctcaagacaaaagaa
attaataattcttcgagtaaagaaacaacatttgagaaattacccaatgcaggagctgac
aataggcaattagataagatgaacaacagaaactcaagccaggttcctaatttcagcaga
aatcagatcaaagatgacgagagtactgaaagtttgctctcttcccaagttcgagcagct
cagtcatctccaatttctgacaaaagaacaaagtcacaaagttctgatggtttactattt
tctcctatcacagaatccagcagtgcatccaaatctcctggtccaccaaacccacttcac
cattgtcctagcagtagcagtgatagttatgatgatattccattcaatatattaaggctt
aaacttaagagagggatttctttaacttccaaggtagataacgaccttgttaagccctca
ctaaccacctctactgtaggtactaatttattcagtgagcttcccacgcagttggacaca
atccaatcactgagcaaagttgataggaaagtaaaagctttttgtcaggtgccgttgctc
aattccattcagaataaagaaaattatgaatctgactcatctatggatgagcctaccaaa
gacaataatgcagaatttatcactatttctgattcagaatcgttagaagaatctaccaac
tcattaatagttccgacatctaaaacagagaagaaagacaatgcagcctctcttcagagt
gtctctgatatacttgaggaaaatcagacttctttgcaagaaatgccaatgaataacaag
tccccctctgtctttgaggagaatgattcccagttctttgaatttgaaagcgaagaacag
gtatattctgtttgggaagatcctcaggcacagcacgagaaagcagatgacagaaaaaag
actgagcttgttgatgagtttcacgtgcaatctgacgaagaagaaattaatgggatgctt
aacgaatggggatatgatacagattatgtatctgatgaattaattgaaaaggttgctgag
gaggtagaagcaagtttgaagggagagcaaaaactaaaacagagtagtctggacactgaa
aagcaattatcacttagagtttcttctccaagcagctctacagctaaaggtacattggtt
gacaaaagcagtgttccacattctgggttcacagctggtactgcctctgaccctcaaaat
gagaaagcaatctgcagtaaaaatataattagtaatacaaatagccacagatgtctaatt
agatctgataaaaataaacagacgtccaaatctacaaagaacttgccagactgtcagcta
gaaaaccagctaactgtgaagaataaggcagataaagctagatttaaacgtaatcttagt
tcatcaaacgtgagagcaggagaaaaacaattatccaaagccactttgagtaaagattca
agcaagtccactgtaaatcagcaatctcactgcaatggcccagaccagaaatctaggttt
gaaaatgggctaaataaaaattcagaggaaaaaggatgcctgatgtcattatttaatgtt
tccaaatcttctgccagggatgtacaaaaggaatttccttcaacatcagtgaaacaccat
tctagctcgcttccaaagaaggtgcgtagacgtcctgaacctacttcaaccgttgaaaag
cttggcctcaaaaagaagattcgtaaagcatttgatctttctcagggcagccttgacacc
ttgactgaactgcgtaattatggtcaaagaaaggggactattgagcataaacacagtaag
aaggcaaagctcatttcaccacagaaattaacagtacatacaaatcaacgattactggtt
tctcaggatcgccagtatctaagacagtctaaacttcggttaaacaataatgagaagaaa
aggaaatgtacatctacacatgacgaaagtgctttcccaaaaagaactctgtcaactgaa
ggaagttccaactctctttctgcttgtgtacaaaggagtcagaagcacaaatccacttca
gtggaaacagacaatacttgtgttgcagctggtactttgttagaaaagcaatgtagtaaa
acaatagacatggcttcaagtgagcaaaaactgtcgagtattcatgcagttgatgacttg
aatttaatactgcgtgatcctttagctaaggatgttagcgcagatgaaagcttggaagat
aatgaattaatgttgacacagagggatcccatagacatggatatagatgatgacaacaca
gaagaggaggattccagaaaagcaccttcaaatgcaaacgaaaccagatgtcaatacaca
ggatgctctgatacaattatatcttcagagaaattttgtaagcagcattctctatctgac
cccaaagatatctttcctaaaccaggattacctctatctattcagaaaagctcaaaacct
gcaactaccaaactctttgcttccagctctacctcgcgcaatgctcagcttgctacagag
atgcagagtgtcccaaaacgtccaggaggatcagcttccaaagttcagcaagttcaaaga
ccctcagtagcaaacctcgtgccactgacgtcgaaaccaactcctattacaaagactgtg
gaaactcctaatgttcttcgaactctaaataaagatcataatttcagaccacagccaagt
tttcaaacatcagttccagcattaccaagcaatgcacctctgccacctgggaaatccatg
caaacttcacctagcatcaacttggatctgacagaacatcattatcgcgaccaatcttat
cttatcaatgctgtccttaaatgggactatcagatgtttgactcattagatcagtttggg
gtgcctgattctctttgtgaaattccaccacgagaagtgcctgaaaggtttcgatcatat
gaagaatattttcaaactttttaccctttactgatgttgaacctctttgagcagttagct
cagaaactgaaggaatccaagcagacaaatagagtgattcagaactttctgactttgaag
aactatcgtgtggtaggacgaatatactgtgcagaatttcaagtttctctacgtgatcac
gagattgaaaagcaactacaccctaaggaggacgatgtcgtgttcctctggctgccccaa
aatcagaattactacatgcaagaagagggcgaaataatgagtaataatccagtcccccac
ataagccatatctcaaggatatcgcgtatttcaactgggcgtgattcattgacaactctt
cacctttcaatccgaacgagaggaaatgttagtgcagtgaaaaaccagccagtgaggtgt
ggtgtaattggttcccttgtgaccactttgcggcagttcaaaggattgctttttctagct
aagacgcctctgatcaggccgattctttcagccaattctgcatactttattcagagagat
cttgtggaatgcccaaagttgaacaatgctcatgattacaacgaacatcagcagaaagca
attcatgtggcttatgcaatggcgaaacaaccaagaattcccaacatctgtctcatacag
gggcctcctggaacaggaaaatcaaaaacaattgttggcttcctacatcatttgctcaat
gaggaacaagagaatgtgaaaccatctgacggcaggaacataagaactaaacgaaccagg
attcttgtgtgtgcaccgtcaaatgcagctattgacgacctcatgaaaaagatcattgtt
gattttaagtcaaagtgcaaagataagaataacacattaggaaactgtggggatgtgaac
ctggtaagactgggccccgagagagctatccattcagatgtactgaagttcagtttggat
tatcaagtgaatcatagaatcaagaaaggccagtctgatgctgatcaggtcattcagaga
cgaaaggattggttggaccggaagctagatgaactggggaagaaatgtgccatcatcaaa
aaagacaaggagcagattgaagttgcgacacgagaaaagagaaaattggagaaggaaagg
gaggagcttgggcgcaaactgaaggagcttcgaggacgaacccaggacatacagctaaac
attattctggaatcacacatcatctgctgcactttgagtacctgtgggattatgcttttg
gagatgtcattccgaaaattgggacatgagccatttagttgtattgtcgtggatgaggct
gggcaggcatgtgaaacagaaatactgattcctttgatctatcgttgtcctaaacttgtt
cttgttggagaccatgaacaattgccaccaaccataatctccatgaaagcaaaggagttg
cgctatggccgatcaatgatgtgccggttgcaaaagtgcctgcacgatgaagtgaagagg
actaattctggacagagcccagtgacaatgctattaacacagtacaggatgcatcctgac
atctgtctttttccctccaagtacatttatagaagtttgttgaagactgatgaaatgata
gagatgcagcgttgttctctgacctggcctttccagtcatacatgttgtttgatgtgacg
gatggatatgaatgccgggagagagactcatacgtcaacacacaagaagtaaaactggta
atagctttgatcagtatgattgcagagaaacaaaaaggcatttgtcgtaatattggagta
attaccccctataatgcacagaaacagaaaataatgaatcaaattgatcaagagttgaga
acagctggacttgaacaaggcaggtcagtgcaggtgggcacagtggatgggtttcaagga
tgcgagaaggactgcatcattgttacctgcgtcagagcaggcaattttcaaggatctatt
ggattcttagcagaccggcagagactgaatgttacaattactcgagctcgtctgagtctc
ttcattctgggaaatctgaaaacgctcatggagaataaagattggaaagctttgattcag
gatgcacagaaaagaggagccatagtgaaaacaagtgaaagtgattataagaaagattgc
caaaaaatcttgaagcccaggcctgctttccagagaaatatttctgatccagatgcatta
atgggtgaacagaagcaagttcctggtcttgcacagaaaagttcatggaatgaaactagt
acgcgttcagcagctgatgtcagcagtgggcaatttccaaaaacaccgattccttctcaa
tcagtagtttcaaaacatcatttgcataatgctcagtcatctgttactgcacagcctgag
acatcaggtaggtcagagttgtctactcaggctatacctagggatccaagactggcccga
aaggctttgcttccggagactcagccacaattaaaggtcagtcatacttttgcagagtca
catgtagtaaatccaccagattcctgtgcatctggtagtgggcattggactattcattct
tcgcacttcagtcagccccctagaaattctctttccaggattggtgatgataaacctaat
gattctactctgagcagaagtttgagcttttcttctgggacttctgtgtgtagaaatgat
cagaatagagcctacagcgtcaacatttgtgcaggttcccggaaacaattacaggatgaa
aaggcaaaagaagattggtctggagagcagaaacagagacacaaatga
DBGET
integrated database retrieval system
