Rhincodon typus (whale shark): 109935038
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Entry
109935038 CDS
T06055
Name
(RefSeq) interferon regulatory factor 8-like
KO
K09447
interferon regulatory factor 7
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04620
Toll-like receptor signaling pathway
rtp04621
NOD-like receptor signaling pathway
rtp04622
RIG-I-like receptor signaling pathway
rtp04623
Cytosolic DNA-sensing pathway
rtp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
109935038
04621 NOD-like receptor signaling pathway
109935038
04622 RIG-I-like receptor signaling pathway
109935038
04623 Cytosolic DNA-sensing pathway
109935038
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109935038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109935038
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
109935038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
IRF-3
Motif
Other DBs
NCBI-GeneID:
109935038
NCBI-ProteinID:
XP_048463297
LinkDB
All DBs
Position
17:33921746..33940267
Genome browser
AA seq
427 aa
AA seq
DB search
MNNQKPQLRSWLIAQINSGSYHGLRWLNKEKTTFRIPWKHAGRQDLCENDYSIFKGWATV
SGKCTDGPPKWKANFRCALNNIDSFTLLEDNSKDNSDPHKIYAITNQRVNSAVDPNMDGA
LQEDDNLESQLRISPETNLEQPNFALQCSAMFHSQGQLEEWIPDFDLMNLSDSAEDQMAP
GLFYPANIYNPAMNGIDSLQVPLDTHPQEVFNVSPAQVVPTDEYRELPSHTFNTDQTWEP
LHVPTSHVMDNMAQEMPVHYLTPDVPLNPASGTQVEIPIVSQLQQVLRDFDLTIYYRGKE
VFQSTVRNAYGCRLYHDEENERFAQLQQIRFPSTEEIKDCQQKKFTNYALSNMAGGLLLE
SKNGDLFAKRLGKCQVFWTGSGASMNEESQKLNRDEEIKLFSLKDFFTGKFPAHWLLLLM
FKALASL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaccagaaaccacagctccgatcctggttaatcgctcagattaacagcggcagt
tatcatggactgcgttggctgaacaaagaaaaaaccacgttccgtattccctggaaacac
gccggcaggcaggacctgtgtgagaatgattacagcatcttcaagggttgggcaacagtg
agtgggaaatgtactgatggtccacccaaatggaaagctaacttccgatgtgccctcaac
aatattgactcattcactttgctggaggacaactcaaaggacaactcagatccacataaa
atctatgccataactaaccagagggtcaattcagctgttgatccaaatatggatggagct
ctgcaagaagatgataacctcgaatcacaactgcgcatcagtcctgagactaacctggaa
cagcccaactttgcactgcagtgctctgcaatgtttcactctcagggacagttagaagaa
tggattccagattttgatttaatgaatctgtcggacagtgctgaagaccaaatggctcct
ggcctgttctatccggcgaacatctataacccagcgatgaacggaatcgacagtctccag
gtgcctctggacacccatccccaggaagttttcaatgtgtccccagcccaagtcgtgccc
actgatgagtacagggaactgccaagtcacacattcaacacagaccaaacgtgggaacct
ctgcatgtcccaacatctcatgtaatggacaatatggcccaggagatgccagtacactac
cttactcctgatgtccctctgaatccggcttcaggaacacaggttgaaattccaatcgta
tctcaactccaacaagttctaagagattttgaccttaccatttactaccgtggcaaagag
gtttttcagagcacagtcagaaatgcttatggctgccgcctgtatcatgatgaagagaat
gagagattcgctcagctgcaacaaatcaggttcccaagtacagaggagataaaggattgc
caacagaaaaagttcaccaattatgccctgtcaaacatggcgggaggacttctcctggag
agtaaaaatggagatctttttgccaagagactgggcaagtgtcaagtcttttggactggc
tcaggggcatccatgaatgaggagtcacagaagctgaaccgagatgaggagattaaatta
ttcagcctgaaagatttcttcacgggtaagtttcctgctcattggcttctgttgttgatg
ttcaaagccctggcttccttgtaa
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