Rhincodon typus (whale shark): 109935177
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Entry
109935177 CDS
T06055
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109935177 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109935177 (edc4)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109935177 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
109935177 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
Beta-prop_EDC4L
Beta-prop_HPS5
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
CelTOS
WD40_Prp19
WDR55
Beta-prop_EML_2
EIF3I
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
109935177
NCBI-ProteinID:
XP_048461646
LinkDB
All DBs
Position
15:46424120..46520659
Genome browser
AA seq
1397 aa
AA seq
DB search
MASPLSQASKMDIENATQHLRDMLKLDRVSESTVDNQKKPASYNGELNGLLVPDPIAAGD
GPILRESNSTNLDKLNLQQNQEIYLTGDDSSNCVITAKEVEIVASNDSSISNKARGSNKV
KIQPVAKYEWEQKYYYGNLIAVSNQYLAYVIRGANGVGMVRVLSVGMAERTLLKGFTEGV
ADLGFAHLNSNQLACVDEAGNLFVWQLNEESGKIQEKLIVHIKRPEGTPLNANRRVIWCP
FIPEENDENDEGNQTLAVLHEDRAEVWDLDILRNSNSVWPIEATDVKEGFIIVKGHTARI
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPDVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFMPDSFNTNVYPSLKASLDLSAEYL
ILSDVQRKVLYVMELHQNQDEGKAHFVSISEFLLTHPVLSFGIQDVSRCRPRHIEALSAE
EDSDTLNAEGTPGLVESSVVQLKLYCVHTKTLQDVQIYFQPHQNTEEPVLMSSAASHEDF
TFADRLTDMSVEGPASEKGSSRGSQHDLRRMVDLPAPTDFLSVSNDVKPKLMTPDAFMTP
STSLQQISVSPGSSVSTLTAVTGLSNSSANETGSSRPAEDLSLSPKVTLENVSLSNNTSN
AVQASPRNNSVQLIPGLSEQLSTKPLQVTSANSSLPLELQSVDPLCVPQSSPTRERSPDV
ISSASTALSQDIPEIASETLQRAFSGSVLPTEVLEPTHHMDSMASAASALHLLSPRSRPN
SEHSHHSLDMPQVEVERLSTPSLLETVLSQENTAAADNVVSQPWPAAPDITRETRNSINE
SSREDMQEKHKNSTFHRHPYQLHQHDSQDASAEQSDHDDEVASLASTSCSFGSKSASHRL
PVKDWKSKSSPRSSPKLRRKSKKDDGETTQSPRLEQQQQFNTDQEELLSLLRSQQRELCE
LRQSQLELMQRLTDHMDAVQGSIMGHVERIMVTQQEQEQRRMDRILAEGHERSGQFQEQL
SQQLSQNLANSISNRIEKTVRDEMKKTLPQCISKSLEPVPGQLNNHIATKLAAIEGILKE
NITKMVKSKNTAESIGRAAADALQGPIQSSYRESFQSIVVPVFEKACQSMFQQINDSFKQ
GTQEYIQQLEIHLQSKKTQEQEIRDPLLSQLQQMIDRFQSVTDHLAVTITNGMRSEVQHQ
LHVIVSNLQESILTQVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPIPTTHMDFQT
QQAHILQLLQQGQLNQAFQQALTAADLNLVLYVCETVDSELVFGQHPCPLTQPVLLSLIQ
QLSTDLNSRTELKLGYLEDAVMNLDHTDPVARDHMGSVLNQVRQKLYQFNQAEPHSNVSK
RARRLMMMLQGLVTPLS
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccactgagccaggcgtctaagatggatattgagaatgctacacagcacctg
cgggatatgctaaagctggaccgggtctccgagtcaacagttgacaaccaaaagaaacct
gcatcatacaatggcgaattgaatggtttgctggttccagatcccattgcagctggagat
gggcctattctcagagaatcaaacagtacgaatttggacaagctgaacctacagcaaaat
caggaaatatacctaacaggtgatgacagttcaaattgtgttataactgccaaagaagtg
gaaatagtggcaagcaacgattctagcatcagtaataaggccaggggtagcaacaaggta
aaaatacaacctgtggcaaagtatgaatgggagcagaagtactactatggcaacctcata
gcagtgtcaaatcagtatctggcgtatgtcatcagaggggctaatggtgttggcatggta
cgtgtgttgagtgttggaatggctgaacgaactttgctgaaaggatttaccgagggagtt
gctgacttgggttttgcacatctcaattccaatcaactagcatgcgttgatgaagcaggc
aacctatttgtctggcaactgaatgaagaaagtgggaaaatacaagaaaaactgatagtg
cacatcaagagacctgagggaacacctttaaatgcaaacaggagggtcatctggtgccct
tttattcctgaggaaaatgatgaaaatgatgaaggaaatcaaacgcttgctgttttacat
gaagatagggctgaagtttgggatctggatattctaagaaacagtaatagtgtttggccc
attgaagcaactgatgtaaaagaaggctttatcattgtgaaagggcacacagcacggatc
agtgagggtgcattatctccagatggaacagtacttgcaactgcgagccatgatggttat
gtgaagttctggcagatctacatagaagggcaagatcaaccgagatgtcttcatgaatgg
aaaccccatgatggccgaccattgtcatgcctacttttttgtgacaatcacaaaaaacaa
gatccagatgtccctttctggcgtttcctgatcactggagcagatcagaatagagagctg
aagatgtggtgtactgtgtcatggacttgtttacagaccatcaggtttatgcctgactct
tttaataccaatgtgtacccaagtctgaaagccagtctggatctatctgcagaatacctc
atcctcagtgatgtacagagaaaagtgttgtatgtgatggagctacatcagaaccaggat
gaaggcaaagcccattttgtctccatatctgagtttttgttgactcacccagtacttagc
tttggcatccaggatgtcagcagatgtcgcccaaggcacatagaggctctatcagctgag
gaggatagtgacactttaaatgcagaaggaactcctggccttgttgaatcttcagtagta
cagctaaaactatattgtgtacataccaaaacgctccaggatgtgcagatttatttccag
ccacatcagaatacagaagaacctgttttaatgtcatctgctgcctcacatgaagatttc
acttttgcagatcgtttaacagatatgagtgttgaagggccagcatcggaaaagggatct
agcagaggttctcagcatgatttgcggcgtatggtggatcttccagctcctacagacttt
ctctctgtctccaatgatgtgaaaccaaagctaatgactccagatgctttcatgactcct
agcacttcacttcaacagatctctgtatcaccgggaagcagtgtaagcactttgactgca
gtgactggtttgagtaacagctctgctaatgagactggatcatcaagacctgctgaagac
ttgtctctaagcccaaaggtcacattggagaatgtcagtctcagtaataacacaagcaat
gctgtccaagcgagtccaagaaacaactctgtgcaacttatcccagggctgtctgaacag
ctatctacaaaacctcttcaggttactagtgctaactcttcgcttcctttggagcttcag
tctgtggatcctctctgtgtgcctcagagttccccaacgcgggaacgttctcctgatgtt
atctcctcagcctccacagcattgtcgcaggacattcctgaaattgcctcagagaccctc
caacgtgcattttcaggctctgtattacccactgaagtcctggaacctacccatcatatg
gatagcatggcttcagctgcctctgcactgcatctgttatccccaagaagtagacctaac
tctgaacatagtcatcactctctagatatgcctcaggtggaggtagagcggctgagtact
ccatcactcttagaaactgtcttgtctcaggagaatacagcagcagcagacaacgttgtt
agccaaccttggccagcagcgcctgacataacccgagaaacccgtaatagcatcaatgag
agttccagagaagatatgcaggagaagcataaaaactccacctttcaccggcatccatac
cagttgcaccagcatgatagccaggatgcgagtgctgaacagagtgaccatgatgatgaa
gtagcaagtcttgcttccacatcatgtagctttggttcaaagtctgcttctcatagactt
ccagttaaagattggaaatcaaagtcatctcctcgatcctccccaaaactgagaagaaag
agtaaaaaggatgatggggagacaacacaatccccacggttagagcagcagcagcagttc
aacacagaccaggaagagttactgtctctgttacggagccaacagagagagctctgtgaa
ttgcgacagagccaattggagctaatgcagaggctcacagatcatatggatgcagtgcag
ggctccatcatgggtcatgtggaacggattatggtcacacaacaagaacaagaacagagg
agaatggataggatcttggcagaagggcatgaaagaagtgggcagtttcaagaacaactg
tctcaacagctctctcaaaatttggcaaattctatcagtaatcgtatagagaagactgtt
cgggatgagatgaagaaaactttaccacaatgtatttccaaaagtttggaaccagtgccg
ggtcagttgaataaccatattgcaaccaagcttgcggcaattgaaggaatattaaaagag
aatataacaaaaatggtgaaatcaaagaacactgcagagagtattggaagagctgcagcg
gatgctttgcaagggccgatacaatcaagttacagagagtcattccagagtatagttgta
cctgtgtttgaaaaagcctgccagtcaatgtttcagcaaataaatgacagcttcaagcag
gggacacaagaatatatccagcaacttgagattcaccttcagtccaagaagacccaagaa
caagaaatacgtgatcctctgcttagtcagttgcagcaaatgattgatcgtttccagagt
gtcactgatcatcttgctgtgaccatcacaaatggcatgcgttcagaggttcaacatcag
cttcacgtcattgtcagcaacttacaggaatcgattctgactcaagtgcagagaattgtg
aaaggcgaagttagcctcgcaatgaaggagcaacaggctgttgttacatccagtatcatg
caggccatgcgatcagctgcagggacgcccattccaacaactcacatggatttccaaacc
cagcaggcccacatcttgcagctgttgcaacaggggcaacttaaccaagcctttcaacag
gctttgactgcagcagatctcaatctggtactttatgtctgtgaaactgtggattctgaa
cttgtcttcggtcagcatccttgtcccctgacccagccagttttgctttcacttattcaa
cagctttccaccgatctcaattcacgcacagaactaaaactcggttacctggaagatgca
gtcatgaatctagatcacacagatccagttgctagggatcacatgggttctgtattgaat
caagtcagacagaaactgtaccagttcaaccaggcagaacctcacagtaatgtgagcaaa
agggctcggagacttatgatgatgcttcaaggactagtgactccactgagttaa
DBGET
integrated database retrieval system
