Rhincodon typus (whale shark): 109935265
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Entry
109935265 CDS
T06055
Symbol
lrfn5a
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
109935265 (lrfn5a)
Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
109935265 (lrfn5a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
LRR_5
ig
LRR_1
Ig_2
fn3
LRR_9
V-set
DHU1_N
Sp38
LRRCT
FAM163
Motif
Other DBs
NCBI-GeneID:
109935265
NCBI-ProteinID:
XP_020389518
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Position
8:49706676..49709957
Genome browser
AA seq
774 aa
AA seq
DB search
MEKLLFYLLLIGMTVRAQVCPKRCICQNLSPNLATLCAKKGLLFVPANIDRRTVELRLGD
NFITIIKRKDFANMTSLVDLTLSRNTINYVAPQAFADLRNLRALHLNSNRLTQITNDIFS
GLSNLHHLVVNNNQLIDISSEAFNDILLSLEELDVSYNNLKSIPWEAVQKMVNLHTFSMD
HNMIEQIDEGTFSHLHKLTRLDMTSNKLRKLPPDTLFTRAQVLAYSGLLNPPSFTLSFGG
NPLHCNCELLWLRRLSRDDDLETCASPSQLTGRYFWSIPEEEFICDQPLITRYTHELRVL
EGQRATLKCKAIGDPDPSIHWTSPEGKLISNSTRTALYNNGTLDILITTVKDTGTFTCIA
SNAAGETTAAVELHIIKLPHLVNSTNHIHEPDPGSSDISTSTKSGSNTSNSVSDTKAKPE
KRVEVAETSSSSALIKFNLQHNIPGIRMFQIQYNGSYDDSLVYRMIPSTSKSFLVTNLAA
GTQYDLCVLAIYDDGITSLTATRVVGCIQFTTDEDYVRCHFMPSQFLGGTMIIIIGGIIV
ASVLVFIIILMIRYKVCNNNDPHKMTKVSNVYSQTNGAHLQMCSGIITHSNSKVIMGHEE
NTQYHKDPKSQSSDSTMSQECVTTTSIVPPDWTTGVTASQKLKRKAGPKSSVERPMEAFT
NVETSKKKRENTAISQKPSCAPISLKETPTFRRAHSKSIKYLTLPTETSRAKRRYSLNGD
LSEYHCYTHSQKISSLWSKRSMSMNGMLLQLENSDADSGKATFSSSEWIMESTV
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactgcttttttatctgctgttaattggtatgacagtgagggcccaggtctgt
cccaagcgttgtatctgtcaaaatctgtctccaaaccttgcaactctttgtgccaaaaaa
ggacttctctttgtcccagcaaacattgacagaaggacagtggagctacgtttaggagat
aattttattacaatcattaaaaggaaagactttgctaatatgaccagcctggtagacctt
acattgtcaaggaatacaataaattatgttgcaccgcaagcatttgcagacctgcgcaat
ttgcgggccttacatttgaatagcaacagactaacccagatcacaaatgacatatttagt
ggactttcaaaccttcaccatttagtggttaataacaaccaactaattgacatttcctct
gaagcttttaatgatattttgttgtctcttgaagagttggatgtatcctataataattta
aaatctattccctgggaagcagttcagaaaatggtcaacttgcatacattcagcatggac
cataacatgattgaacaaattgacgaggggactttttcccatcttcacaagttgactcga
ttggacatgacgtctaataaattgcggaagctaccacctgataccttgttcacgagagct
caggtactagcctactcaggactcctgaacccaccaagttttactttgagctttggagga
aatcccttacattgcaactgtgagttactctggctgcgccgtctttcacgggatgatgat
ctggagacctgtgcctcaccttcacaactaacaggtcgttacttttggtcaatcccagaa
gaagagtttatctgcgaccagccgctgattactcgctatacgcacgagctcagagtttta
gaaggtcaacgtgcaacattgaagtgcaaggccattggggatccagacccctccatacac
tggacttcacctgaaggcaagctaatttcaaattcaacacggacagctttatataataat
ggaaccttagacatccttataactactgtcaaagatacaggcacttttacctgcattgct
tcaaatgctgctggagaaaccacagcagcagtggaacttcatattatcaaactcccacat
ttagtcaacagtacaaatcacattcatgagcctgatcctggctcatcagacatttctact
tcgactaaatctggctcaaacactagtaatagtgttagtgacactaaggccaaaccagaa
aagagggtggaagttgctgaaacatcatcatcatctgcacttattaaatttaatttgcaa
cataatatccctggcattcgtatgttccagattcagtataatggttcttacgatgattca
cttgtttacagaatgattccttccacaagcaaaagcttccttgtcactaacttggctgca
ggaactcaatatgacctgtgtgtcttagcaatctacgatgatggtatcacctccctcaca
gctaccagggttgttggctgcatacagtttactacagacgaggattatgttcgctgtcat
tttatgccatctcagtttctgggaggaaccatgataattataatcggtggaattattgtg
gcttctgtgttggtctttattatcatattaatgattagatacaaggtgtgcaacaataat
gacccacacaagatgacaaaggtcagtaatgtctattctcagacaaatggagctcatttg
caaatgtgcagtggaataataacccattcaaattctaaagtcatcatgggtcatgaagag
aacacacagtatcataaagatcccaaatcacaatcgtcagattctaccatgagccaggaa
tgtgttaccactacctccattgtaccacctgactggactacaggtgttactgcatctcaa
aagctgaaaagaaaggctgggccaaagtcaagtgtcgaaagaccaatggaagctttcacc
aatgttgagacatccaaaaagaaaagggaaaatactgcaatttcacagaagccctcctgt
gctccaatttctctgaaagagacacccacatttagacgagcacactctaagtccattaag
tatcttactctgccaacagaaacaagcagagctaaacggagatactcactcaatggagat
ttatcggagtatcactgctatactcattcacaaaagattagcagcctgtggtcaaaaaga
agcatgtcaatgaatggaatgttgttacagttggaaaactctgatgctgatagtgggaaa
gctactttctcaagttctgagtggataatggaaagcaccgtgtga
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