Rhincodon typus (whale shark): 109935366
Help
Entry
109935366 CDS
T06055
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109935366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109935366
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109935366
Spliceosome [BR:
rtp03041
]
Complex C
Other components
Step II factors
109935366
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
S1
DEAD
AAA_22
AAA_19
nSTAND3
RSRP
AAA_16
PRP38_assoc
TsaE
T2SSE
Transformer
Sigma54_activ_2
nSTAND_NTPase5
PhoH
ABC_tran
AAA_7
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109935366
NCBI-ProteinID:
XP_048448906
LinkDB
All DBs
Position
Unknown
AA seq
835 aa
AA seq
DB search
MRPPAKPSSSSKAETVKPKSEKEKMKELFPALCLPDNLPTKSLLDEDDMKVAADALKELE
ALMPSKADHKKSSKRSSNEKGKRKRRSRSRSRDRDRKRHRRSRSRSHSRDRYKSKSSRRS
RSRSLSPSRDHKDRGRANEKNCEKRKDRHIDRPPPEEPSVGEIYNGKVTSIMQFGCFVQL
EGLRYQPFPRKRWEGLVHISELRREGRVANVADVVSKGQRVKIKVLSFTGSKTSLSMKDV
DQDTGEDLNPNRRRNVGGETNEETTMRNPDRPSNLSLVNTPEVEDDVLERKRLTKISDPE
KWEIKQMIAANVISKEEYPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMD
MSPVKIVKNPDGSLSQAAMMQSALAKERREMKQAQREAEMDSIPMGLNKHWVDPLPDVDG
RQIAANMRGIGMMPQDIPEWKKHAFGGNKASYGRKTQMSILEQRESLPIYRLKEQLVQAV
HDNQVLIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCL
GQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLSPYAIIMLDEAHERTIHTDVLF
GLLKKTVKKRPDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLD
ASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSMGPDVPELIILPVYSALPS
EMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTP
ISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctccagccaagccatcgtcttccagcaaagctgaaacagtcaaaccaaaatca
gaaaaggagaaaatgaaggagctgttccctgctctctgcctgcctgataacctgcctaca
aagagtcttttggatgaagatgatatgaaagtagctgcagatgcattgaaggagcttgaa
gccttgatgccttcaaaggcggatcacaaaaagagcagcaaacgcagctctaacgaaaag
gggaagagaaagagaaggagtcgtagtcgcagcagagacagagaccggaaacggcatcgc
aggtcaaggtccagatcacactccagagatcgatacaaaagtaaatccagcaggcgatcc
agaagcaggagtctgagccccagcagggaccataaggatcgaggcagagcaaatgagaag
aattgtgagaagagaaaagatagacacatagacaggcccccaccagaagaaccatctgtg
ggcgagatctacaatggcaaggtcaccagcatcatgcagttcggatgctttgtacagctg
gaaggtttgagatatcaaccatttcccagaaaacgatgggagggcttggtgcacatctct
gagctcaggcgagagggacgtgtagccaatgttgctgatgttgtcagcaaaggtcaaaga
gttaagatcaaggtgttgtcatttactggatccaaaacaagcttgagtatgaaggacgta
gatcaagacactggagaggatctaaacccaaaccgacgccgcaatgttggtggagaaact
aatgaggaaactaccatgaggaatcctgacagacctagtaatctgtcattggtgaacacc
cctgaggttgaagatgatgtgctagaacgcaaacgtcttacaaaaatctccgatcctgag
aagtgggagatcaagcagatgattgcagctaatgttatttcaaaagaagagtatcctgac
tttgatgaagaaacgggcatccttcctaaagttgatgatgaagaagatgaggaccttgag
atagagctagtggaagaagagcctccgttcctcaggggacatacaaagcagagcatggac
atgagtcctgttaaaatagtaaagaaccctgatggctcactatcccaggctgccatgatg
caaagcgctttggctaaagaaaggcgggagatgaagcaagcacagcgagaggcagaaatg
gactcaatcccaatgggactcaataaacactgggttgatccactacctgatgttgatggc
cgacagattgcagcaaacatgaggggcataggaatgatgccccaagacatacctgagtgg
aagaagcatgcttttggtggaaacaaggcatcttatggtcgtaaaacccaaatgtctatt
cttgagcagagagagagcctacccatctaccgacttaaggagcagctggtacaggctgtt
catgacaaccaagtcctgattgtcattggggaaactggttctggtaaaactacacaaatc
acccagtacttggcagaggcagggtacacaacccggggaaaaattgggtgcacgcaacca
agacgtgtagctgcaatgtcagttgctaagagagtgtcagaagagtatggatgctgttta
ggtcaagaggttggttacaccattcgatttgaagattgcaccagtccagagactgtgata
aagtatatgactgatggtatgttgctgagagagtgcctcatagatcctgacctgtctccg
tatgcaatcatcatgttggatgaggcccatgagaggaccattcacactgatgttctgttt
ggacttctgaaaaagactgttaaaaaacgtcctgatatgaaattgattgtaacatcagcc
acactggatgcagttaaattctctcagtatttctatgaggcacctatcttcacgattcct
ggccgaacataccctgtggaagtgctttataccaaagaacctgagactgattatctggat
gctagtttgattacagtgatgcagattcatttaacagaaccaccaggtgacatcctcgtt
ttcctaactggtcaggaagaaattgacactgcatgcgagattctgtatgaacgaatgaaa
tccatgggaccagatgtgccagaattgattattctgcctgtatattctgctttgccaagt
gagatgcaaaccagaatttttgatccagcccctcctggtagcagaaaggttgtaattgct
accaatattgctgaaacatcactgactattgatggcatctactatgttgtggatcctggg
tttgttaagcagaaagtctataactcaaagacgggcattgaccagctagtggtgactcca
atttcacaggctcaagctaagcagcgtgctggtcgtgcaggaaggacgggacctgggaaa
tgttatcgactctacactgaacgtgcctatagggatgaaatgttgaccacaaatgttcct
gaaattcaaagaactaatcttgctagtacagtactttcactcaag
DBGET
integrated database retrieval system
