Rhincodon typus (whale shark): 109935395
Help
Entry
109935395 CDS
T06055
Symbol
appa
Name
(RefSeq) amyloid beta (A4) precursor protein a isoform X1
KO
K04520
amyloid beta A4 protein
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
109935395 (appa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtp01002
]
109935395 (appa)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rtp00535
]
109935395 (appa)
00536 Glycosaminoglycan binding proteins [BR:
rtp00536
]
109935395 (appa)
Peptidases and inhibitors [BR:
rtp01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
109935395 (appa)
Proteoglycans [BR:
rtp00535
]
Cell surface proteoglycans
Others
109935395 (appa)
Glycosaminoglycan binding proteins [BR:
rtp00536
]
Heparan sulfate / Heparin
Others
109935395 (appa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
APP_E2
APP_amyloid
APP_Cu_bd
APP_N
Beta-APP
Kunitz_BPTI
Baculo_gp41
MUCL1
Spore_III_AB
Insulin_TMD
SnoaL_6
DUF5033
DUF6121
Motif
Other DBs
NCBI-GeneID:
109935395
NCBI-ProteinID:
XP_048458906
LinkDB
All DBs
Position
11:complement(11728567..11818587)
Genome browser
AA seq
666 aa
AA seq
DB search
MEVYPDLQITNVVEANQPVTIQNWCKKGRKQCKGHPHIVVPYRCLVGEFVSDALLVPDKC
KFLHREKMDTCESHLYWHTVAKETCGDKIMNLHDFGMLLPCGIDEFRGVEFVCCPIPEEN
DKIDDSDMDEEDSDVWWGGDDDDYADGSDKIVEEQPIEDESEIDDEDDDELDGEEADDQY
EDPTEHTTSSTTTTTEAIEEVVREVCSEQAETGPCQAMLPRWYFDISEGKCAQFIYGGCG
GNRNNFASEEYCLAVCNSVIPTTAASTPDAVDKYLETPGDENEHAYFQKAKERLEAKHRE
RMSKIMREWEEAERQAKNLPKADKKAVIQRFQEMVESLEQEAASERQQLVETHMARVEAM
LNDRRRIALENYLAALQADPPRPRHVLNALKKYIRAEQKDRQHTLKHFEHVRMVDPKKAA
QIKSQVMTHLRVIDERMNQSLSLLYKVPSVAEEIQDEVDELLQKEQSYIDDLVANSVSDT
RISYGNDALVPSLSETKTTIELLPDDGEFNLDDFQPLHPFEVDSIPANTENEVEPVDARP
APDRGLTTRPGSGLTGIKTEEIAEVKMETEFRQDSGYEVHHQKLVFFPEDVGSNKGAIIG
LMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKF
FEQMQN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggaggtttatcctgatttgcagataacaaatgttgttgaggccaaccaacctgtgaca
atccagaactggtgtaaaaagggccgtaagcagtgtaaagggcacccccacatcgtagtt
ccttatagatgcttggttggtgagtttgtcagtgatgccctccttgtcccagataaatgc
aagtttctacatcgggagaagatggacacctgtgagagccatctgtattggcacactgtg
gcgaaagagacctgtggtgataagataatgaacctgcatgactttgggatgttgctgcct
tgcggtattgatgagtttcgtggagtggaatttgtttgctgccccattccagaagaaaac
gacaagattgatgactctgacatggatgaagaggactcagatgtgtggtggggaggcgat
gatgatgactatgcagatggcagtgataaaattgttgaagagcaaccaatagaggatgaa
agtgaaattgatgatgaagatgacgatgaactggatggtgaagaggctgatgaccagtat
gaggatcccactgaacatacaaccagtagcactactaccactacagaggccattgaagaa
gttgtgagagaggtttgctctgagcaagcagaaaccgggccttgtcaagctatgttacct
cgatggtactttgacatcagtgaaggaaaatgtgcacagttcatttatggaggctgtgga
ggaaacagaaacaactttgcctccgaagagtactgtttggccgtctgtaacagcgtcatc
cctaccacagctgccagcacaccggatgctgttgacaagtaccttgaaacacctggcgat
gagaatgagcatgcttatttccagaaggcaaaggagaggttggaagccaagcatagagag
cgtatgtcaaagataatgcgagaatgggaagaagctgagcgtcaagcaaaaaatctgcca
aaagctgacaaaaaggcagtcattcagcgtttccaagagatggtggaatcactagagcag
gaagcagcaagtgaaagacagcagttggtagagacccacatggcaagggtggaggccatg
ctaaatgatagacgccgtattgcattggaaaattaccttgctgcactccaggctgatcca
ccccggccccgacatgtcctcaatgcactcaagaagtatattcgtgctgaacagaaggac
agacagcacacactgaaacattttgagcatgtccgcatggttgaccccaagaaggcagct
cagatcaaatcacaagtaatgactcatttacgtgtaattgatgagcgtatgaaccagagc
ctgtctctgctttacaaggttccttcagttgcagaagagatccaggacgaagttgatgaa
ctgctgcagaaggagcaaagctacattgatgacttggtagcaaactctgtcagtgacacg
cgaattagttatggaaacgatgcactggtcccatctctctctgagacgaaaacaacaata
gaacttctaccagatgacggagagtttaatcttgatgactttcaacctctgcatccattt
gaggttgactccatccctgctaacacagagaatgaagttgaaccagttgatgcgcggcca
gcaccagacagaggactaaccactcgaccaggctctggactcactggcattaagacagag
gagatagctgaagtaaagatggagactgaattccggcaagattctggttatgaagtccat
catcagaagctggtgtttttcccagaggatgttggatcaaataaaggagctatcattggt
ctcatggttggtggcgttgtcatagcaacagtgattgtcatcaccctggtgatgctgaaa
aagaagcagtatacatctattcaccatggtgttgttgaggttgatgctgctgtaactcca
gaggaacgccacctctcaaagatgcagcaaaatggatatgagaatccaacgtacaaattc
tttgaacagatgcaaaactaa
DBGET
integrated database retrieval system
