Rhincodon typus (whale shark): 109935546
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Entry
109935546 CDS
T06055
Symbol
taf1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109935546 (taf1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rtp01001
]
109935546 (taf1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109935546 (taf1)
03036 Chromosome and associated proteins [BR:
rtp03036
]
109935546 (taf1)
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
109935546 (taf1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
109935546 (taf1)
Protein kinases [BR:
rtp01001
]
Serine/threonine kinases: Other
TAF1 family
109935546 (taf1)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109935546 (taf1)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
109935546 (taf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Ribosomal_L44
Motif
Other DBs
NCBI-GeneID:
109935546
NCBI-ProteinID:
XP_048460972
LinkDB
All DBs
Position
14:complement(37638827..37776270)
Genome browser
AA seq
1972 aa
AA seq
DB search
MSDSDSDEDHEQPFSLTGFLFGNINEDGQLEDDSVLDKESKKHLDGLGTLGLGTLIKEIT
ANDDDAVESDERSSNAEGWIQSKDDAIDYSDINEVAEDETRRYRQVMGNLQPLRKLEGND
DDDDDYDADSEDVDSKLMPPPPPPPPLNKEESNSQEIIANGVNTAVLSTTGGSRAADALF
PCSVSNENDGIILPSIIAPSSSSEKVEFSSSSDSESETDRHIPRSRQNESQKEDKLTLPL
AGIMQRDSTKQLPNVTELFPEFRPGQVLRFLRLFGPGKNIPSVWRSARRKRKKKHRDPQP
EASVQEGEGEETKEQKSGWDYHYAAPPPPEQCLSDDEITMMAPVESKFSQSTGDADNITD
MRPKVAEWRYGPAQLWYDMLGVPEDGEGFDYGFKLKATREEEQMLEEEVTCLVEVQEPSE
EIEKSADEKELQSEMEALLDEHFLMVTQLPWEEDIIWNGEDVKHKTTKSQRASLAGWLPS
SMTRNATAYNAQQGLNRGTSWLSNPLPPTPVQKTTMPGPPIPAKGKDKHAPEQHVSQEDD
KTWYSIFPIDNEELVYGRWEDNIIWDDQAMDKILEPPVLTLDPNDENIILEIPDEKEEMT
SNSPSKENKKESSARKSRILLGKTGVIKDEPQQNMSQPEVKDPWNLSNDEFYYPKQQGLR
GTFGGNIIQHSIPAVELRQPFFPTHMGPMKLRQFHRPTLKKYSFGALSQPGPHSVYPLLK
HIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGDLILAEYSEEYPPLMMQVGMATKIK
NYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRCPIYLHKMPETD
FLIIRTRQAYHIRELVDIFVVGQQCPLYEVPGPNSKRANTHVRDFLQVFIYRLFWKSKDR
PRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKPDFRLPTEEEIRAMVS
PEQCCAYYSMLAAEQRLKDAGYGEKSFFAPEEENEEEFQMKIDDEVRTAPWNTTRAFIAA
MKGKCLLEVTGVADPTGCGEGFSYVKVPNKPQQQKDDNQPQPVKKTVTGTDADLRRLSLK
NAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGDTPMSKFARGSRFSVAEHQER
YKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSRER
EEQERKELQRMLMGEEIGNDKDRDKKEKKDRKGSSCSTPTPGVFHKDDDTASVTSLNSSA
TGRRLKIYRTFRDEDGKEYVRCETVRKAAVIDAYVRIRTTKDEDFIRKFALFDEQHREEM
RRERRRIQEQLRRLKRNQEKEKLKGPPEKKPKKVKERPDLKLKCGACGAIGHMRTNKFCP
LYYQTNAPPSNPVAMTEEQEEELEKTVIPNDNEELIKVEGTKIVLGKQLIESADEVRRKS
LVLKFPKQQLPPKRRRRVGTTVHCDYLNKPHKSIHRRRTDPMVTLSSILEGIINDMRDLV
NTYPFHTPVNGKVVKDYYKIITKPMDLQTLRENVRKRMCHSREEFREQVELIVKNCATYN
GTKHPLTQIAQSMVELCDQKFREKEDKLVRLEKAINPLLDDDDQVAFSFILDNIVTQKMM
AVQDSWPFHHPVNKKFVPDYYKVITNPMDLETVRKNISKHKYHNREVFLQDVELILSNSI
KYNGTDSLYTKTAQEIVNVCHQTLAEYDEHLTQLEKDIASAKEAALDAAEFDSLDPLTPG
PHSPQGHCREGRIRTGEEESDVDVEGFEEDDDGKPKTPAPASDFYHALHETTEGECEMED
EDEINVPQRQASVLYEDLLMSDGEDEDHSDEEEGDNPFSSIQLSESGSDSDVEMPAIRPK
RPHLIPENTRMGMENEESMMSYEGDGGETSQIMEDSNVSYESYEETELKSNTRDTTFSSG
GCDYELSEEEEDEEQRHGPSVLNEVHLSEDEEDSEEFHSIEGDTDIDSDIET
NT seq
5919 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactcggacagtgatgaggatcatgagcaaccattctctctcactggctttctg
tttgggaacatcaatgaggatggacagttggaggatgatagtgtccttgacaaggagtca
aaaaagcatctggatggtttggggacgctgggtcttgggactctcatcaaagaaatcaca
gccaatgacgatgatgcagtggagtctgatgaaaggagcagcaatgcagagggttggatt
cagagtaaagatgacgccattgattactccgatatcaatgaggtagcagaggacgagacc
cgcaggtatcgtcaggtgatgggaaatcttcagccactaagaaaactggaaggcaatgat
gatgatgatgatgactatgatgcagacagtgaagatgtggactcaaagctcatgcctccc
cctccaccaccgcctccgctgaataaggaggagtcaaattcacaggaaataattgcaaat
ggagtaaatacagcagtgctgagtactactggaggatcgcgtgctgctgatgcccttttc
ccttgttctgtctctaatgagaatgacgggatcattttaccttccataatagctccttca
tcctcctcagagaaggttgaatttagcagttcctctgattcagaatctgagacagaccga
cacattccacgatcaaggcagaatgaatctcagaaggaagacaagctcacattgccgctg
gcaggtattatgcaacgagattcaactaagcaactaccgaatgttacagaactgttccca
gaatttcgaccaggacaggtattgcgttttttgcgtctctttggacctggaaagaacatt
ccatcggtttggcgaagtgcaagaaggaaaagaaaaaagaaacatcgggatccacaacct
gaggcttctgttcaagaaggagagggagaagaaacgaaagaacaaaaatctggctgggac
tatcattatgctgcgccaccaccacctgaacaatgtctctctgatgatgagattacaatg
atggctcctgtggagtcgaagttctctcaatccacgggtgatgctgataatataacggac
atgagaccaaaagttgcagaatggcgctatgggcctgcacaactttggtatgatatgctg
ggagtgccagaggatggcgagggatttgattatggtttcaaactcaaagcaacaagagaa
gaagagcagatgctagaggaagaagtaacttgcctggtggaggtccaggaaccttctgag
gaaattgagaagtcagctgatgaaaaggaattgcagagtgaaatggaggctcttctagat
gagcatttcctcatggtcactcagctgccctgggaagaagacattatttggaatggagag
gatgtcaaacataagactacaaaatcccagcgagctagcctagcagggtggttgccttct
agcatgactcgaaatgctacagcttacaatgcacaacaagggctaaaccgtggcacctct
tggttgtcgaatcctttgcctcccacacctgttcagaaaaccacaatgcctggtcctcca
atcccagcaaaagggaaggataaacatgcaccagagcagcacgtttcccaagaggatgat
aaaacttggtattccatcttccctattgataatgaggaattggtgtatggaagatgggaa
gataacatcatctgggatgatcaagccatggataaaattctggaaccgcctgtgttgacg
cttgacccgaatgatgaaaacataattcttgaaattcctgatgagaaagaagagatgacg
tcgaactctccttccaaagagaataaaaaagaatcatcagctcgcaagagtcgcatcctt
ttaggaaagactggtgtcattaaggatgagccacagcagaatatgtcacagccagaagta
aaggacccctggaacctttcgaatgatgagttttactaccccaaacagcaaggactgcga
gggacatttggagggaacattatccaacattctattcctgctgtggaacttcgacagcca
tttttcccaactcatatgggaccaatgaaactcaggcaattccaccggccaacactgaag
aaatattcttttggagcgttgtcacagccaggacctcattctgtgtacccactgctgaaa
catatcaagaaaaaagccaagatgcgtgaacaggaacgtcaagcttctggtggtggagag
atgttctttatgcgaactcctcaggatctgacaggtaaagatggtgaccttattctcgct
gagtacagtgaagaatatccaccgcttatgatgcaagttggcatggcaaccaaaatcaaa
aactactacaagaggaaaccaggcaaggatcccggcgcaccggattgtaaatatggcgag
actgtttattgccacacatctccattccttggatccttgcatccaggacagttattgcag
gcatttgaaaacaacctctttcgctgtccaatatacctccataagatgccagaaacagat
tttctgataatccgaactcgtcaagcataccatatcagagaattggttgatatttttgtt
gtaggccagcagtgtccactctatgaagtgcctggtccaaactcaaagcgtgctaacaca
catgtacgagactttcttcaggtatttatttaccgccttttctggaaaagtaaggatcgt
ccacgcagaattcgtatggaggacataaagaaggcatttccttcccactctgagagcagc
attagaaaacgattgaaactgtgtgcagatttcaagcgaacaggaatggactcaaactgg
tgggtgcttaaaccagacttcagattgcccacagaggaagagattcgagccatggtctct
ccagagcagtgctgtgcatattatagtatgttagcggcagagcagcgtttaaaggatgct
gggtatggtgaaaaatcattctttgcaccagaggaggagaatgaagaagaatttcagatg
aagatcgatgatgaggtcagaacagcaccctggaataccacacgagcattcattgccgca
atgaaaggcaaatgtctactagaggttactggggttgctgatcctactggctgtggtgaa
gggttttcctacgtcaaggttcccaacaaaccacagcagcaaaaggatgacaaccaaccc
caacctgtgaagaagaccgtgacaggaacagatgctgatctgcggcgcctatctctgaaa
aatgccaaacagctccttcgcaagtttggagtgccagaagaagagattaaaaagctgtct
cgatgggaagttattgatgtggtacgtacgatgtcaacagaacaggcccggtctggagat
actcccatgagtaaatttgctcgtggttcccgtttttcagttgctgaacatcaggaaagg
tacaaagaagagtgtcagcgaatctttgatcttcagaacaaggtcctgtcttcaacagag
gttctttctacagacacagacagcagttcagcagaagacagtgattttgaagaaatggga
aaaaatattgaaaacatgttacagaataagaaaacaagctcgcaactttcacgtgagcgt
gaggagcaggagcgtaaggaactgcagaggatgttgatgggagaggaaattgggaatgat
aaggaccgtgacaaaaaggagaagaaagacaggaaaggttcatcttgcagcactcctact
cctggagtgtttcacaaagatgatgacactgcctccgttaccagtcttaactcctcagca
acaggacgacgccttaagatttatcgtacgttccgagatgaagatggaaaggagtatgta
agatgtgaaactgtcaggaaggctgctgttattgatgcatatgttagaatacggacaaca
aaagatgaagatttcatccgcaaatttgctctatttgatgagcaacatcgtgaggaaatg
cgaagagaacgacgcagaattcaggaacaacttcggcgactcaaacggaatcaggagaag
gaaaaattgaaaggaccgccagagaaaaaacccaaaaaggtcaaagaaaggcccgaccta
aagctaaaatgtggtgcctgtggtgccattggccacatgaggaccaataagttttgtcct
ctgtattaccaaacgaatgcaccaccaagtaacccagttgcaatgacagaggagcaagaa
gaggagcttgaaaagactgttatacctaatgacaatgaagaacttatcaaagtggaagga
acgaaaattgtattgggcaagcagctaattgaaagtgcagatgaagtacgcaggaaatct
ttggtcctcaaatttcctaaacagcagcttcctccaaaacgtcgaagacgagttggaacc
acagtccattgcgattacctaaataaacctcacaaatccattcataggcgacggacagac
ccgatggttaccttgtcatccatattggaaggaatcatcaatgacatgcgagaccttgta
aatacctatccattccacactccagtaaatgggaaagttgtgaaggattattataaaatt
attactaaaccaatggatttgcagactttaagagagaatgtccggaaacggatgtgccat
tcacgagaagaattccgagagcaagttgaacttattgttaaaaactgtgccacctacaat
ggtacgaagcatcctctgactcaaattgctcaaagtatggtggaactctgtgaccaaaag
ttcagagagaaagaagacaaattggtccgcttggagaaagccattaatcctcttctggat
gatgacgatcaagttgctttctcatttatacttgataatatagtcactcaaaagatgatg
gctgtgcaagattcttggcctttccatcatccagttaataagaagtttgttcctgattat
tacaaagtaatcacaaatcccatggatcttgaaactgtgaggaagaatatttccaaacac
aaataccataatcgtgaagtcttcctgcaggatgtggaacttattctctctaacagcatc
aagtacaatggtacagatagtttatacacgaaaactgctcaggagattgtgaatgtctgt
catcaaactctggctgagtacgatgaacatttgactcaactcgaaaaagatattgcatct
gccaaggaggctgctcttgatgctgcagagtttgacagtcttgatcccctgaccccaggg
cctcattctcctcagggtcattgccgtgagggacgcataaggacaggtgaggaggaatct
gatgtggatgtggagggttttgaggaagatgatgatggtaaaccgaagacacctgcccca
gcaagtgacttttaccatgctctgcatgaaacaactgagggagagtgtgaaatggaagat
gaggatgagataaatgtaccacagcgtcaggcaagtgtgttgtatgaagacttgctgatg
tcagatggagaggatgaagatcatagtgacgaggaagaaggagacaatccattttcttcc
attcagctcagtgagagtgggagtgactctgatgttgaaatgcctgccattcgaccaaaa
agacctcatctaatacctgagaatacacgcatgggaatggagaatgaggagagcatgatg
tcctatgaaggagatggtggtgagacctctcagatcatggaggacagtaatgtaagctat
gagagctatgaagaaactgagctcaaatcaaatactcgtgataccacctttagcagtgga
ggatgtgactatgagctgtctgaggaagaagaagatgaggaacaaaggcatggaccaagt
gttcttaatgaggtacacctgagtgaggatgaggaagacagcgaggaattccactccatt
gagggggacactgatatagactcagacatagaaacctga
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integrated database retrieval system
