Rhincodon typus (whale shark): 109935811
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Entry
109935811 CDS
T06055
Symbol
ubc
Name
(RefSeq) polyubiquitin-C
KO
K08770
ubiquitin B/C
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04120
Ubiquitin mediated proteolysis
rtp04137
Mitophagy - animal
rtp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109935811 (ubc)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109935811 (ubc)
04137 Mitophagy - animal
109935811 (ubc)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
109935811 (ubc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109935811 (ubc)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109935811 (ubc)
Ubiquitin system [BR:
rtp04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
109935811 (ubc)
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of breast milk
109935811 (ubc)
Exosomal proteins of other body fluids (saliva and urine)
109935811 (ubc)
Exosomal proteins of colorectal cancer cells
109935811 (ubc)
Exosomal proteins of bladder cancer cells
109935811 (ubc)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
Ubiquitin_2
DUF2604
Rad60-SLD_2
TBK1_ULD
Ubiquitin_5
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
109935811
NCBI-ProteinID:
XP_048467171
LinkDB
All DBs
Position
24:complement(47399817..47402149)
Genome browser
AA seq
306 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGNC
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgcagatctttgttaagaccctgactggcaagaccataacacttgaggttgaacccagt
gacaccattgaaaatgtcaaggccaaaattcaggataaagaaggcatcccacctgaccaa
cagcgtttgatctttgctggcaagcagttggaagaaggacgcacactgtctgattacaac
atccagaaggagtctactttgcatttggtgttgcgtctgagaggtggcatgcagatcttt
gtgaaaaccctgactggcaagaccatcaccctggaagtggaacccagtgacaccattgaa
aatgtcaaggccaaaattcaagacaaagaaggaatcccacctgatcaacagcgtctgatt
tttgcaggcaaacaactggaagatggtcgcacactttctgactacaacatccagaaagag
tccactctgcacttggtgctgcgcctgagaggtggcatgcaaatctttgtgaaaaccctg
actggcaagaccataacacttgaggttgagcccagtgacaccattgaaaatgtcaaggcc
aaaattcaggataaagaaggcatcccacctgatcagcaacgtttgatctttgctggtaag
cagttagaagatggccgcaccctatctgattacaacatccagaaggaatccacgttacat
ctggtattgcgtctgagaggtggcatgcagatctttgtgaaaaccctgactggaaagacc
atcactttggaagtggaacccagtgacaccattgaaaatgtcaaggccaaaattcaagac
aaagaaggaatcccacctgatcaacagcgtctgatttttgcaggcaaacaactggaagat
ggtcgcacactctcagactacaacatccagaaagagtccactctgcatttggtgctgcgc
ctgcgggggggcaattgttaa
DBGET
integrated database retrieval system
