Rhincodon typus (whale shark): 109935823
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Entry
109935823 CDS
T06055
Symbol
gabrg1
Name
(RefSeq) gamma-aminobutyric acid receptor subunit gamma-1
KO
K05186
gamma-aminobutyric acid receptor subunit gamma
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04080
Neuroactive ligand-receptor interaction
rtp04082
Neuroactive ligand signaling
rtp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
109935823 (gabrg1)
04082 Neuroactive ligand signaling
109935823 (gabrg1)
04519 Cadherin signaling
109935823 (gabrg1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtp04040
]
109935823 (gabrg1)
Ion channels [BR:
rtp04040
]
Ligand-gated channels
GABA-A
109935823 (gabrg1)
SSDB
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GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
OB_DEPS-1_6th
Motif
Other DBs
NCBI-GeneID:
109935823
NCBI-ProteinID:
XP_048456271
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All DBs
Position
1:80610525..80704402
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AA seq
459 aa
AA seq
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MSQRLQIRNKCIKSLLMAYSQCANKVDDEDYEDTVLNKTWVLAPRVHESDVTNILNDLLK
GYDNKLRPDIGVRPTMIESDVYVNSIGPVDAINMEYTIDIFFAQSWYDSRLKFNGTMKVL
LLNSNMVGKIWIPDTFFRNSKKSDAHWITTPNRLLRIGNDGKILYTLRLTINAECYLQLH
DFPMDHHSCPLEFSSYGYPKNEIVYRWKKDPVEIAHQKHWRLYQFAFDGFRNTTDVMHTQ
SGDYVIMTIFFDLSRRMGYFTIQTYIPCSLTVVLSWVSFWINKDAVPARTSLGITTVLTM
TTLSTISRKSLPKVSYITAMDLFVSVCFLFVFAALMEYGTLHYFVSNRNNSKKKKQKSKP
AIWVFRSIKSPVIKVRPGSTLIQVNNIAHLQERDDYGYECLDGKDCKSFFCCFEECRTGA
WRQGQIHIRITKIDSYSRIFFPTAFGLFNLVYWIAYLYL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagagactgcaaattcgaaacaaatgtattaaaagcctacttatggcttactcc
cagtgcgcaaacaaagtagatgatgaagattatgaagatacagtgttaaataaaacatgg
gtcctggcaccaagagttcatgaaagtgatgtcaccaatattctgaatgacttattgaaa
ggatatgacaacaaacttagaccagatataggagtgaggccaacaatgattgaaagtgac
gtctacgtgaacagcattggcccagttgatgcgatcaatatggaatataccattgacata
ttttttgcgcaatcttggtatgatagcagactgaaatttaatggtacaatgaaggttctc
ctgctaaatagtaacatggttggcaaaatctggatcccggacacatttttccgaaattcc
aagaagtcggatgctcactggataacaactcccaatcgattgctacgaatcgggaatgat
ggaaaaatactgtatacgctaaggttaaccatcaatgcggaatgctatcttcagcttcat
gactttcctatggatcatcattcctgtcccctggaattctcaagctatggatacccaaaa
aatgaaattgtgtatcgctggaagaaagatccagttgaaattgctcatcaaaagcattgg
cgactttatcaatttgcatttgatggattcaggaacacaactgatgtaatgcacacccag
tccggagattatgtcataatgacaatattctttgatctaagtagaagaatggggtacttc
acaattcagacctacataccttgctcacttacagttgtcctgtcatgggtttcgttctgg
attaataaagatgctgtaccagcgagaacatcattaggtattacaacagttctaactatg
acgacactcagtacaatttcccggaaatcgctgccaaaggtgtcctacatcactgccatg
gatctctttgtatctgtttgtttcctttttgtcttcgctgctctcatggagtatgggacc
ctgcattattttgtcagcaacagaaataacagcaaaaaaaagaagcagaaatccaaacca
gctatctgggtgttcaggtccattaaatcacctgttattaaagtccgtccaggatcaaca
ttaattcaggtgaacaacattgcacacctacaagaacgggatgattatggttacgaatgt
ttggatgggaaagactgtaagagcttcttctgctgtttcgaggagtgtcgtacaggcgca
tggaggcagggtcaaatacatatccgtataaccaaaattgattcctactctagaatcttc
ttcccgacagcatttggtctgttcaatctggtttattggatcgcatacctttacctataa
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