Rhincodon typus (whale shark): 109935827
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Entry
109935827 CDS
T06055
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109935827 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109935827 (trim54)
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109935827 (trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
Sina_RING
Prok-RING_4
DUF6793
Zn_ribbon_FGT1_2
DUF6244
UvrD_C
CDC37_M
Motif
Other DBs
NCBI-GeneID:
109935827
NCBI-ProteinID:
XP_048453177
LinkDB
All DBs
Position
5:72257491..72320184
Genome browser
AA seq
376 aa
AA seq
DB search
MNLAVGFKPMLGGAQTMDSLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
FWQSRGSTTVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHTKS
DQQLMCEEHEEEKINIYCLTCEAPTCSMCKVFGAHKDCEVAPLQNVYKRQKTELSDGIAM
LVAGNDRIQAIITQLEEICKTIEDNSRRQKQLLCEKFDFLYAILEERKKEMLQCITREQE
EKVQYVRSLMRQHGDHLEGASKLVETALQFTEEPQMAVFLQNTKQLIKKVIDTSKAAQLE
RTEPGYENMDHFVVNLGRAEQVLQRINFQTDYQGEDEEEVEEEEIEEGGGAEEDGETTDG
DELPTPLHSTGTNLTF
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttgcagtgggattcaaaccaatgcttggaggcgcgcagacaatggacagtttg
gagaaacaactaatttgtcctatttgtctggaaatgttcacaaagccagttgtgatttta
ccatgtcaacataacttgtgtagaaaatgtgccaatgatgttttccaggcttccaatcca
ttctggcagtcgagaggctccacaacagtgccttcagggggtcgctttcgctgtccttcc
tgccgacatgaggtagtactggatcgccatggagtttatggcctgcagagaaatctcctg
gtggaaaatatcattgacatctacaagcaagaatcatccaggccactgcataccaaatct
gaccagcagttaatgtgtgaagagcatgaagaggaaaagattaatatttactgcctgact
tgtgaggctccaacttgctcaatgtgcaaagtctttggtgctcacaaagattgtgaagtg
gcacctctccaaaatgtctacaaacgtcaaaagactgagctcagtgacggtattgcaatg
ctggtggcaggaaatgacagaatccaggcaatcattactcagctggaagagatatgtaaa
acgattgaggataacagcagaagacaaaagcaactcctttgtgaaaaatttgattttctg
tacgccattctagaagagaggaaaaaagaaatgcttcaatgtattacgcgtgaacaggag
gagaaagtacagtatgtgcgatctctgatgagacaacatggggatcatttggagggagcc
agcaaacttgtggaaacagctctgcagtttacagaggaacctcagatggcagtgttcctg
cagaatacaaagcagctgattaaaaaagttattgatacctcaaaagcagctcagttggag
agaacggaacctggatacgaaaacatggatcattttgtggtcaatcttggaagagctgaa
caggtgctacaaaggataaatttccaaacagattaccagggagaagatgaggaagaagta
gaggaagaagagatagaggaaggtggaggagctgaagaggatggagaaacaactgatggt
gatgaattaccaactccactgcattctactggaacaaacctaacattttga
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