Rhincodon typus (whale shark): 109936004
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Entry
109936004 CDS
T06055
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RLIM isoform X1
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109936004 (rlim)
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109936004 (rlim)
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109936004 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-ANAPC11
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-RING-like
zf-RING_4
zf-HC5HC2H
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
109936004
NCBI-ProteinID:
XP_020390214
LinkDB
All DBs
Position
14:complement(19206619..19260656)
Genome browser
AA seq
663 aa
AA seq
DB search
MENAANEDGGNDQADSQSSNEDQRRRQSDRLDREEAFYHFVNNLSEEEYRLMRDNNLFGT
PGEVTEEELIRRLQQVKDGVIQNNPDTRRSEGSGDNRGAEGSEEGSSGDSLLEWLNAFRQ
TGNTTRSGQSGNRSWRAVSRTNPTSGDFRFSLEINVSRSRIDQSAEMESEQPMDTSNVVA
TVPAAEEAVIPVPSENISAPPSTAMQPPPTVTDLPMAMTEEGIQSQPERSASTGTRRSRG
PSGELPYENRYELLRHELETQAQHQGRPRGGRSRSPERRRSSRTRNNRSRSPLHPVSEGT
SRSRRQGLSQRPDRSTSESGTEGISRTRQHVMSRQSRVGDGVQSETTNHVPVLEPNERRE
PSQEAADSSEAVVSDPSVAGRRPPTIMLDLQVRRVRPGENADRDSIANRTRSRSQTSDNT
VVYESERGGLRRTFSRSERAGVRTYVSTIRIPFRRISDSGLGEAASVALQTILRRIMMGG
ELSSFVDSDSDSESSNRGQSQVHDVSESQNSTSESPGMASEGRTGEQQAGEQRNGIETDS
VTGARRREGQQTRGLFGLEESGTLPILRLAHFFLLNDEDEDDQPRGLTKEQIDNLSTRNF
GESDAIKTCSVCISEYTAGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRQAVLVRTAGE
SVG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgctgctaatgaagatggaggaaatgatcaggctgactctcagtcttctaat
gaagatcagcgcaggcgtcagtcagaccgcctggatcgggaagaggccttctatcatttt
gtcaataacctgagtgaagaggagtacaggctgatgagggataataacctatttggtaca
ccaggggaagtcacagaagaggagcttatcaggcgtttacaacaggtgaaggacggtgtc
attcagaacaaccctgatactcggagaagtgaaggctctggtgacaacagaggcgctgag
ggttcagaagaaggatcaagtggagattctcttctagagtggttaaatgcttttagacag
actgggaacacaacgagaagtggacaaagtgggaatcgttcctggagagcagtcagtcgt
acaaacccaacaagtggtgattttagattcagcttggaaattaatgtcagtcggagtaga
attgaccaaagtgctgaaatggaaagtgagcaacctatggacacttcaaatgtggtagca
acagtgcctgcagcagaagaagcagtgataccagtaccatcagaaaatataagtgcaccc
ccatcaacagcaatgcaaccaccaccaactgtaacagatctaccaatggctatgacagaa
gaaggtattcagagtcagcctgaaaggtcagcttccactggaacacgacgaagtcgagga
ccaagtggagagttaccttatgaaaacaggtatgaacttttgagacatgagcttgaaacc
caagctcaacatcaaggtcgcccaagaggtggtagaagtagaagtccagaacgccgaagg
tcttctagaaccaggaacaatcgaagtcggtcacccttgcatccagtcagtgaggggaca
agtagatcacgacgtcaaggactttcccagaggcctgatagatccacttcagaaagtgga
acagaaggaatttccagaactagacagcatgtcatgtccagacagagtcgggttggagat
ggggtccagtctgaaacaactaatcatgttcctgttcttgagccaaatgaacgtagagag
ccttcccaagaagctgctgactcttcagaagctgtggtcagtgatccctctgtagctggg
cgccgaccaccaaccattatgttagatcttcaagtgagaagggtgagacctggtgaaaat
gcagatagagatagtatagccaacaggacccgatcacgatcccaaacatccgacaacact
gttgtatatgaaagtgagcggggtgggctcaggcgcacattctcccgctctgagcgagca
ggggtgcgaacttatgtcagcaccattcgtattccttttcgcaggatatctgattcgggt
cttggagaggccgcctcagttgccctccaaacaatactacgccggataatgatgggtggt
gaactgagttcatttgtggacagtgacagcgattctgaatctagcaacaggggccaaagt
caagtgcacgatgtttctgaatcgcagaacagtacaagcgaatccccaggcatggcttct
gaaggcagaacaggcgagcaacaggcaggagaacagcggaatggcattgaaacagatagc
gtaactggagctaggagaagagaaggtcagcaaacccgaggcttatttggccttgaagaa
agtggtactttacccatacttaggcttgctcatttcttcctgctcaatgatgaagatgag
gatgatcagcccaggggactgactaaagagcagattgacaacttgtccacgagaaatttt
ggagaaagtgatgctattaaaacctgcagtgtgtgtattagtgaatacacagcaggaaac
aagctgcgcaagctaccctgctctcacgagtatcatgttcactgtattgatcgctggctg
tctgaaaactccacatgtcccatatgccgtcaggctgttttagttcgcaccgctggtgaa
agtgttggctag
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integrated database retrieval system
