Rhincodon typus (whale shark): 109936156
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Entry
109936156 CDS
T06055
Symbol
chd1l
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109936156 (chd1l)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
109936156 (chd1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
LIG3_BRCT
SWI2_SNF2
BRCT
AAA_22
SLFN-g3_helicase
BRCT_2
Selenoprotein_S
Motif
Other DBs
NCBI-GeneID:
109936156
NCBI-ProteinID:
XP_048458669
LinkDB
All DBs
Position
11:complement(25500096..25595872)
Genome browser
AA seq
1009 aa
AA seq
DB search
MPHFVQNLRNLLSNQPEEFEQVEEEDVRSWGLTGISLRPYQLIGLNWLVQRYSIQHGSIL
ADEMGLGKTCQSICFLLCLTGRQKEKGPFLILCPLSVLKNWTEELAGFAPRLSVVVYTGD
KDTRQALQQDLKNCNFHVLLTTYEICLKDASFLSRLNWSVLIVDEAHRLKNQNSLLHKTL
KSFSVRFTLLLTGTPAQNNLYELYSLLSFVEPKVFSGDEVDEFTKYYSNVEEDAEKAKEL
HRLMHPFLLRRIKADVAAELPKRMDIVLYHGMSVLQKKYYKAILMKDLDAFENEMGKKTR
LMNILIQLRKCVDHPYLFDGMEPEPFQIGDHLVEASGKLHLLDKLLAFLHPRGHRVLLFS
QMASMLDILQDYMEYRGYSYERLDGSVRGEERYLAIKNFNQQDIFVFLLSTRAGGVGMNL
TAADTVIFVDSDFNPQNDLQAAARAHRIGQKKPVKIIRLIGRDTIEELIYRRAMSKLKLT
NALIEGGQFSMKEREESFAPFDMQLSDILKFGLDKLLSTEESTIEDIDMENILGETRNGS
WITKEQPMQTVEADEEPVGTSHMYQYEGKDYSKEPSAADQKTFEQLLDLHKIVLEEASKG
GRSLRTKSKVLLAAPLDLTMKKKRILSPEELEQRRQKRQEAAAKRAKLLSDKKQQREEEE
HKKKMAWWESNGYRSPCLPSLSSESDDESEEDGNDLPGDLDSTDTEQTSIHYILGDVTHP
VAADKEDAIIVHCVDDSGRWGKGGLFTALEARSNEPRKQYGRAGKMKDLSLGSVLLFPID
DKESRNTGQDLLALIVAQQRDRSNNLSGIKLTALEEGLQKLYRAAKRRNASVHLPRIGHT
TKGFNWYGTERLIRKYLSLKGISTYIYYFKRYNASSSESSNSAVKISMKQDKANRSRTEG
GAAGQSTESLAILPDFMSGVSVYFFNISEKKRLSRYLITYNGDVDENFCAETTHIVAQVD
GSSQMQELQSYLQENPTAVVVQARWLEVCFSKQQKVDTFLYEIKLNNSQ
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcctcactttgtacaaaatcttcgcaatttactcagtaaccagccggaagagtttgaa
caagttgaggaggaggatgttaggagttgggggttgacaggtataagtcttcgtccatac
caacttattggtttaaattggctggttcagcgctacagtattcaacatggcagcatcctc
gcagatgaaatgggtctgggtaaaacatgtcagtcaatatgttttcttctctgcctaact
ggaagacaaaaggagaaaggtccttttttgatcctgtgtccactgtcagtactgaagaac
tggacagaagaactggcagggttcgctccacgactttcagtggttgtgtacacaggagat
aaggatacaagacaagctttgcaacaagacttgaaaaattgcaatttccatgtacttctc
accacttatgagatttgcttgaaagatgcttctttcctgagtagactgaattggagtgtg
ctgattgtggatgaggcccacaggttgaagaaccagaactctttactacataagactctg
aaatcgttttcagtacgattcacactgctgctaactggaacaccagcgcagaacaatctt
tatgagctctattcgctgctaagctttgtggaaccaaaggtgttctcgggggacgaggtc
gatgaatttactaaatattacagcaatgtagaagaggatgcagaaaaagctaaagagttg
cacagacttatgcatccattcctcctgagaagaattaaagctgatgttgctgctgagtta
cctaagaggatggatattgttctgtatcatggaatgtctgtactgcagaaaaaatactat
aaagccattctaatgaaggatttggatgcatttgagaatgaaatgggcaagaaaactcga
ttgatgaatatcttaatccaactcagaaaatgtgttgatcacccttatctttttgatggt
atggaaccagaaccattccagatcggggatcatcttgtggaagcaagtggtaaacttcac
ttactggacaaattactcgcatttctgcatcccagaggtcatcgagtgttgctgttttct
cagatggcaagcatgctggatatcttgcaggattacatggaatatagaggttatagctat
gaacgcttggatggatcagtacgaggagaggagcgataccttgctatcaaaaactttaat
caacaagatatttttgtttttcttttaagcacccgggcaggtggtgttggaatgaatctt
actgctgctgacactgtgatatttgtggacagtgattttaatcctcaaaatgatctccag
gcagcagcaagggcccacaggattggccagaaaaagccagtcaaaattattcggctgatt
ggaagagacaccattgaagaattgatttacagacgagctatgtcgaaactgaaattgaca
aatgctttgattgaaggtggtcagttctctatgaaggagagagaagaatcatttgcacct
tttgatatgcagttaagtgacatcctgaaatttggtctggataaattactgtctactgaa
gagagcactatcgaagatattgatatggaaaatattctaggggaaaccaggaatggatca
tggatcactaaggagcagccaatgcagacagttgaagcagatgaagagccagtgggaaca
agccacatgtatcagtatgaggggaaagattattctaaagaacccagtgcagcagatcag
aaaacctttgagcaacttctggaccttcacaaaatagtacttgaagaagccagtaaagga
ggaagatcactccgcacaaagtctaaggtccttctggctgctccactggatctgaccatg
aaaaaaaaacgaatactatcacctgaagaacttgagcaacggcgtcagaaacgtcaagag
gcagcagctaaacgtgcaaaattactatctgataagaaacagcagcgagaagaggaagaa
cacaaaaaaaagatggcttggtgggaatctaatggctacagatctccctgtcttccatca
ttgagtagtgagagtgatgatgaatccgaggaggatggaaatgaccttcccggtgatctg
gattctacagatacagaacagacatccattcactatattcttggggatgtcactcaccca
gtggctgctgacaaagaggatgcgataatagtgcactgtgttgatgactctggaagatgg
ggaaaaggaggtttgtttacagctttggaagctaggtccaatgaaccaagaaaacagtat
gggcgagcagggaagatgaaagatctttctctgggaagtgttcttctatttcccattgat
gacaaggagtcaagaaatacaggacaagacctgttagcattgatagttgcacagcaaaga
gatcgttccaacaatctttctggaatcaaattgacagctttagaagaaggactgcaaaaa
ctctacagagctgctaagagaaggaatgcaagtgtccatctcccacgaatagggcacaca
accaaaggatttaactggtatggcactgaaagacttattcggaagtacctttccttgaaa
ggcatatcaacctacatctactacttcaaaagatataatgcatcttcttctgaatcctcc
aattctgctgtcaaaatatcaatgaagcaggataaagcaaatagaagtaggactgaggga
ggtgctgcaggacaatcaacagaaagtttagctattctaccagatttcatgtctggagtg
agcgtttacttcttcaatatatcagaaaagaagaggctaagccgttatttgattacttac
aatggtgatgtggatgagaatttctgtgctgaaaccactcatattgtggcacaagtggat
ggttctagccaaatgcaggagttacagagctacctacaggagaatcccacagcagttgtt
gtccaagctcgatggcttgaagtttgtttctcaaaacagcagaaggttgacacatttttg
tatgaaattaaactaaataactctcagtga
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