Rhincodon typus (whale shark): 109936309
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Entry
109936309 CDS
T06055
Symbol
vti1b
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1B
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
109936309 (vti1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109936309 (vti1b)
Membrane trafficking [BR:
rtp04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
109936309 (vti1b)
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GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
Sec20
DUF4407
HBM
Fusion_gly
DUF4795
DUF3958
Motif
Other DBs
NCBI-GeneID:
109936309
NCBI-ProteinID:
XP_048456110
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All DBs
Position
8:64552505..64565081
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AA seq
222 aa
AA seq
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MSSEEFEKMHEAFGSVFEELRCQCERLPKYSGEQKKRFLREIDEKVDEANEVLDGMEKEL
RKAPLSFRNPMNTKIRSYRKDVSKLQQDVRSNGYGLRSDVKYTEYSAENEQSNYLAAQRA
LLLQGTDSLNRATQSIDCSHRIAAETDQIGSDIIEELGGQREQLERSKDRLINTGDNLSR
SRKILRSMSRRVMTNKLLLGIIILLEVVILAAVVYLKFFRKH
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgaggagtttgagaagatgcacgaagcctttggtagtgttttcgaggaactg
aggtgtcaatgtgagcgtctgcctaaatattcaggagaacagaagaaaagatttctgcgt
gaaattgacgaaaaagttgatgaagcaaatgaagttctggatggaatggaaaaggaatta
aggaaagcaccactctcattccgtaatccgatgaatacaaaaattcgttcatacagaaaa
gatgtgagcaagctgcagcaggatgttagaagtaatggatatggattacgtagtgatgtt
aagtacacagagtacagtgctgaaaatgaacaaagcaattacttagcagctcagcgtgct
ttgcttttgcaaggtacagacagtctgaacagagcaactcagagtatagattgttctcac
agaatagcagcagagactgatcagataggttcggatataattgaggaacttggagggcaa
cgagagcaactggaacgctctaaagacaggctaataaacacaggtgacaatttgagccgg
agtcggaaaatactgcgttccatgtccagaagggttatgacaaacaagttgctactgggc
attatcatccttctggaagtggtaattctagcagcggtcgtatatctcaagttcttccgc
aaacattaa
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