Rhincodon typus (whale shark): 109936417
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Entry
109936417 CDS
T06055
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03420
Nucleotide excision repair
rtp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109936417 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
109936417 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109936417 (ddb1)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109936417 (ddb1)
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
109936417 (ddb1)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
109936417 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
109936417 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Beta_propel
Motif
Other DBs
NCBI-GeneID:
109936417
NCBI-ProteinID:
XP_048462817
LinkDB
All DBs
Position
17:complement(17619226..17693498)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSADDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGK
IAVMELFRPKGEGKDLLFILTAKYNACILEYKQNGENIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQVPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGALIIGQESITYH
NGDKYLAIAPPAIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEREEQMDGNITVRDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVAGMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSTRD
TDDMLVLSFVGQTRVLMLNGEEVEETEMPGFVDDQQTFYCGNVAHQQLIQITSGSVRLVS
QEPKSLVSEWKEPNGKNISVASCNNSQVVVAVGRVLFYLEIHPKELKQISFIEMEHEVAC
LDITPLADSSSMSPLCSVGLWTDISARILKLPSFETLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLEIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLNES
PKRICYQEASQCFGLVSSRVEVLDPSGGTTVLRPSASTQALSTSVSSSKLFPSSTSQHES
SFGDEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSIVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIIVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENSFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTLGSVLFGTVNGMIGLVTSLSESWYNFLLEVQNRLNKVIKSVGKIEHSFWRSFHSER
KTEPAAGFIDGDLIESFLDLSRPKMQEVAAGLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaactatgtagtgacagcgcaaaaaccgacggcggtgaatgcttgtgttact
ggtcacttcacatcagcagatgatctcaatctgctgattgccaagaacaccaggttggag
atttatgtggttacaccagagggtttgcgtcccgtcaaggaagtgggcatgtatggcaag
attgctgtaatggagctcttccgaccaaagggagaaggcaaggacttgcttttcattctg
actgcaaaatataatgcctgtattctggagtacaaacagaatggggaaaacatcgatatc
atcacacgagctcatggaaatgtacaggatcgtataggccgtccctctgagactggaatc
ataggcattgtggaccctgagtgtcgcatgataggtctcaggctgtatgatgggctcttt
aaagtgattccattggatagagacaacaaagagctaaaggcattcaatatccggctggaa
gaacttcatgtaattgatgtgaaattcttgtatggctgtcaggtcccaacaatttgcttt
gtctatcaggatccccagggtcgtcacgtgaagacctatgaagtatccttacgagagaaa
gaatttaacaagggaccctggaaacaagaaaatgttgaggctgaggcatcaatggttatt
gcagttccagaaccatttggaggagcgctaatcataggccaagaatccattacataccat
aatggtgataagtatctcgcaattgcaccaccagctatcaagcaaagcacgattgtttgc
cacaaccgtgtggatcccaatggttcccgctaccttctgggagatatggaaggtcgtctg
tttatgctgttactggagagggaagaacaaatggatggaaacattactgtcagagacctc
cgtgtagaactgttgggagagacatccattgcagaatgtttgacatatttggataatgga
gttgtatttgttggatctcgtcttggagactctcagcttgtcaagctaaatgtggacagc
aatgagcaagggtcctatgttgctggcatggaaactttcaccaatttaggtcctattgtg
gatatgtgtgtagttgatctggaaagacaaggacagggccagctggttacttgttcagga
gcatttaaggaaggttctctaagaataattcggaatggaattgggatccatgagcatgct
agtattgatcttcctggtattaaaggtctgtggccattgcgttccgattccactcgtgac
actgatgatatgttggtcctttcatttgttggacaaactcgtgtgttgatgcttaatggg
gaggaggtagaagagactgaaatgccaggctttgttgatgaccaacagaccttctattgt
ggaaatgtggctcatcagcagctcattcagataacatctggttcggtgcgactggtcagc
caagaaccgaaatcgctggttagtgagtggaaagaaccaaatggaaagaatatcagtgtt
gcgtcctgtaataacagtcaggttgtggtagcagtaggccgtgtattgttttacctggag
attcacccgaaagagctcaaacaaatcagctttatagagatggagcatgaggttgcttgc
ctagacatcactccattggctgacagtagtagtatgtcacccctgtgctctgttgggctt
tggacagatatttcagctcggatcctcaagctaccatcatttgaaaccctgcataaagaa
atgcttggtggagagataattccacgttccattttgatgacaacatttgaaggcagtcat
tacttgctgtgcgctctgggtgatggtgctctcttttactttggacttgaaatagaaaca
ggtttgttgagtgaccgtaagaaagttacactggggacccaaccaacagtcttaagaacc
ttcagatctttgtccaccacgaatgtgtttgcttgttcagaccgccccactgtcatttac
agcagcaatcacaagcttgttttctcgaatgttaatctcaaggaagtaaactacatgtgt
cctcttaactctgagggataccctgatagcttggccttggccaacaacagcactttaacc
ataggaactattgatgaaattcagaaactacatatccgaacagtaccccttaatgaatct
ccaaaaagaatctgttaccaagaggcatcacagtgctttggtctggtcagcagcagagta
gaagtgttggaccccagtggaggtaccactgtcttgagaccaagtgctagcactcaggcc
ctttctaccagtgttagctccagtaagcttttcccaagtagtacttcgcagcatgagagc
tcatttggggatgaagtggaggttcacaatctactaatcatagatcaacatacatttgaa
gttcttcatgctcatcaattccttcagaatgagtatgcactgagtattgtatcctgcaag
ttgggcaaagatcccaacacatacttcattgtaggtacagcaatggtatatcctgaagaa
gcagaaccaaaacaaggacgtattatagtattccagtactctgatggcaagcttcagaca
gtagcagagaaagaagtaaaaggtgcagtgtattccatggtggagttcaatggcaaattg
ctagcaagcatcaatagcacggtgcgattatatgaatggactgctgaaaaagaactacgc
acagagtgcaatcactacaataatatcatggccctctatctgaagacaaagggagacttt
atcttggtgggagacttgatgcgttcggtgctgcttcttgcctataaaccaatggaaggg
aattttgaagagattgcccgagacttcaaccctaattggatgagtgctgttgaaatactg
gatgatgataatttcctgggcgccgaaaactctttcaacttatttgtgtgtcaaaaagac
agtgcggctacaacagatgaagaaaggcaacacctccaagaggtggggttgttccatctt
ggcgagtttgtcaatgtgttctgtcatggatctctggtaatgcagaatcttggtgagact
tccacacctacactgggttcggtattgtttggtacagtcaacggcatgattggtctggtt
acctcattgtctgagagctggtacaacttccttttagaagttcaaaatcgactgaataaa
gttatcaaaagtgtgggcaagattgaacattcattctggagatcatttcactcggagaga
aaaactgaacctgctgcaggtttcatagatggagaccttatcgagagtttcttagatctc
agtcgccctaaaatgcaggaggtggctgcaggcttacagattgatgatggaagtggaatg
aagagagaagcaactgtcgatgatctgataaaaattgttgaagagttgaccagaatacat
tag
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integrated database retrieval system
