Rhincodon typus (whale shark): 109936492
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Entry
109936492 CDS
T06055
Symbol
abca7
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp02010
ABC transporters
rtp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109936492 (abca7)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109936492 (abca7)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rtp02000
]
109936492 (abca7)
Transporters [BR:
rtp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109936492 (abca7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Terminase_5
Motif
Other DBs
NCBI-GeneID:
109936492
NCBI-ProteinID:
XP_048469856
LinkDB
All DBs
Position
29:12577753..12759034
Genome browser
AA seq
2214 aa
AA seq
DB search
MSFWIQLGLLLWKNFTYRKRQIVQLVIEILWPLFLFFILVSVRQSHPSFEQNECHFPNHA
LPSAGTLPWIQGIICNIKNPCFQHATPGETPGNVGNFNQSILSRLLSDAQKVLLQANQDH
ILQSFNQLLRALKKLNEDSLPLSGLPIKEYLQKNQTLSEFFLNNASLPTEVIDDLMAAKL
NLNQISLAGSRESFKEIACNVSHLSSFLATKNKKAFNRLQKNLCALPERTLQKATTIFLS
EVNFSKLLAERITFSAGNALDASNALNSFIHRVGSLVQQFSNMTSFSEFRDAIQWLTSPN
ATRSPTMMFQTISKIVCGHSDGGGLQIPFLNWYEDDNYKAFFGRNSTDEKIITFSNLTSP
HCNDLLKTLESYSSIMWKSIKPLFVGKILYSPDTPATLKIMKEVNRTFEDLSLLQEVQGA
WNEAGPQIWKFMESSQEIQLLQKMLRNPAIATLIDLQLNSTSWTAKSIANFLSSQTQESE
NSIYTWKQAYEELDQVVKSFSQVFECISLNKLEAVPTEEKLVVRALQLLEERQFWAGVVF
LVDEPTGDEFPTLQPHIKYKIRMDIDYVAPTHKIKDRFWDPGPEALTIRDLQYIWGGFVY
IQDLVEQAIIRVQTNEHKRTGLYLQQMPYPCYVDDGFLRVLNRSLPLFMILSWIYSVAMI
VKRLVHEKEARLKETMKMMGLSNGILWVSWFISSFIPFLISAAFLTLILKKGEILPYSNP
SVIFVFLATFAVSTIMLCFLISTFFSGANLAAACGGIIYFSLYLPFVLCVAWRNSVTFPL
QIFVSLLSPVAFGFGCEYFSLYEEQGIGIQWFNLVSSPVEGDAYNFTISIILMLFDALLY
GLAAWYIEAVFPGQYGFPKPWYFPVLRSYWCGEFYCNEDLFEFPDNRSTNKVHLEQEPTH
LKLGVSIQNLVKVYGNGKKVAVNGLSVNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGRNIFTEMDTIRKSLGMCPQHNVLFDILTVEEHIWFYGRLKGLTEEEVNEEMKL
MIDDVDLVHKRREQTKNLSGGMQRKLSVAIAFVGGSKVVILDEPTAGVDPYSRRGIWELL
LKYRKGRTIILSTHYMDEADLLGDRIAIISHGKLCCCGSSLFLKNHLGTGYYLTLVKKEN
DKTTPASSSSTTIGLRKYQLSRIPHSEDDLVLSMYEYKLEFLWCSECVPTSEPGCPRFKP
RLLQSCVIADVNMLIKNIYGNVPIKRVRCSRSSEHTLQPVSEEGDFELPDTEPEPKETDF
MQCMEGRGSYQLRGWQLTRQQFHSLFIKRFLYARRSRRGLFAQIVLPALFVFIALFFSMI
VPPFGKYPPLELSPWMYGEQYTFISDDFPEDPTTRDLISALLSDPGFGTKCMESGTNESM
QCQEGGTDWIIPQVSESALKIFRSGNWTMQNPSPACQCSSKKTQRMLPLCGEGAGGLPPP
QLQRNTGDILQNLTGRNVSDYLVKTYPQIISKSLKTKKWVNEFRYGGFSLGARSSQVLPS
LNEVNISIIEIRSRLNVTKDSSMDRLLGNIGNFIEGLNTNNNVKVWFNNKGCHAMVSFVN
VMSNAVLRANLPPGKDPRMFGITAYNHPLNLTKEQFTEVALIGISVNLLVSICVIFAMSF
VPASFVLFLIEERVSKAKHLQFVSGVKPGIYWLANFAWDMCNYAVSATLVVVIFICFQQK
SYVSAPNLPALILLLFLYGWSITPLMYPASFLFSIPSSAYVVLTCVNLFIGINGSVATFV
LELFRDKKLDEVNQILKKVFLIFPHFCLGRGMIDMVKNQAMADAYERIGEKIFTSPLSWD
LVGKNLFAMAVQGVIFFLFTILLQYKFFFKMRSLSLKLPPLETEDEDVARERQRVTYGGS
DGDILVIKDLTKVYRRKKKPAVDRLCVGIPPGECFGLLGINGAGKTSTFKMLTGDTDVSS
GEAFLDGYSILSNIQDVHQNMGYCPQFDAVNKLLTGREHVEFYSRLRGIPEHEVAKVTEW
AVKKLGLSRYADRPSGTYSGGNKRKLSTAIALIGCPPVIFLDEPTTGMDPKARRFLWNCI
LSVIREGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKSRFGDGYTIILRMDS
TTLDSSNVEEFMVSTFPGCVLKEKHHSMLQHQIPTGCCSLAKIFSALMTNKEKLKIEDYS
VSQTTLDQVFVNFAKDQSEDYYLKDIFTHGPQYQDTVKRITNFLADENMRESSV
NT seq
6645 nt
NT seq
+upstream
nt +downstream
nt
atgagcttctggatacagcttgggctcctcctttggaagaatttcacctatcggaaaagg
caaattgttcagctggttattgagattctgtggcctcttttcctcttctttatattagtc
tcagtgcgtcagtcccatccatcatttgagcagaatgaatgtcactttccaaaccatgca
ttaccatcagcagggacgctgccatggatacagggaatcatctgtaatattaaaaatcct
tgcttccagcatgctaccccaggagaaacgccaggaaatgtggggaatttcaatcaatcc
attctttcacgtttgctgtctgatgctcagaaggtgctacttcaagctaatcaggaccac
attctacaaagcttcaatcaacttctcagagcattgaaaaagctcaatgaagacagcctt
ccattgtctggtctgccaatcaaagaatatctgcagaagaatcagaccctatctgagttt
ttcctgaacaatgcatcacttcccacagaggtgatcgatgatttaatggcagcaaaatta
aatctcaatcagatatcccttgctggttcaagggaaagttttaaagagattgcttgcaac
gtatctcatctctccagtttcttggctacaaagaataagaaggcattcaaccgtttacag
aagaatctatgtgccttaccagagagaacactgcaaaaagcaacaactattttcctttct
gaggtcaacttctccaaactcttggcggagaggattacgtttagtgctgggaatgcactt
gatgcatctaatgcccttaacagttttatacacagagtgggatctcttgtgcagcagttt
tccaatatgaccagcttttctgaattccgggatgcaattcagtggttaactagtccaaac
gctaccagatcaccaacgatgatgtttcaaacaatatcaaagattgtttgcgggcattcg
gatggaggtggcctgcagatacctttcctgaactggtatgaagatgataactacaaggct
ttctttggcaggaatagcacagatgagaaaatcatcacttttagcaatttaacatcacct
cactgtaatgatctacttaagactcttgaatcttactcttcgattatgtggaaaagtatc
aagccattatttgtagggaagatactgtacagcccagatactccagctacactgaagata
atgaaagaggtgaacagaacatttgaggatctaagcttgttgcaagaggtacaaggagca
tggaatgaagctggaccccagatctggaagtttatggaaagtagtcaggaaatccaactc
ctgcaaaaaatgctgaggaaccctgctatcgctacccttattgatctacaacttaattct
acctcttggactgcaaaaagtattgccaactttctgtcgagccaaactcaagagagtgag
aattccatttacacctggaaacaagcttatgaagaattagatcaagtggtcaaatctttc
tcccaggtctttgagtgcatatctctgaataaactagaagctgttccgactgaagaaaaa
ttagtagtccgggcattgcagcttctggaggagagacagttctgggctggagttgtgttt
ttggttgatgagccgacaggtgatgagtttcccacccttcagccccacatcaaatacaag
atcaggatggacattgattatgtcgctccaacccacaaaatcaaggataggttttgggac
ccaggacctgaagcactcacaattcgggacctgcagtacatctggggaggatttgtttac
atccaggatttggtggaacaggcaattattcgagtacagaccaatgaacacaagaggact
ggactttatttacaacagatgccatatccatgctacgtagatgatggcttcttgcgagtt
ttgaatcgttcgttgcccctcttcatgatcctgtcttggatttactcagtagcaatgata
gtcaagaggctggttcatgagaaggaggcccgactaaaggaaacaatgaagatgatggga
ctgtctaatggaattttgtgggtcagctggttcatcagtagcttcatccctttcctcatc
agtgctgcttttctcacgttaatcctgaagaaaggagagattctcccatacagcaacccc
tctgttatatttgtattccttgcaacctttgctgtttctaccatcatgctgtgtttcctg
atcagcacgttcttctctggtgcaaaccttgcagccgcttgcggtggaatcatttacttc
tccctctacctcccatttgtcctgtgtgtggcatggaggaactcggtcactttcccactt
caaatatttgtgagtctgttatctccagttgcgtttggttttggatgtgaatatttctct
ctctatgaggagcaaggaattggtatccagtggtttaaccttgtctccagccctgtagag
ggtgatgcatacaattttactatttctatcatcctcatgttgtttgatgctctcctctat
ggccttgcagcatggtatattgaagcagtgtttccaggtcaatacggatttcccaaaccc
tggtattttcctgtcctcaggagttattggtgtggagagttctattgtaatgaggatttg
ttcgaattccctgataaccgcagcaccaataaagtccatctggagcaggaaccaactcac
ctcaagttgggggtgtccatccagaacctagtgaaagtttacggaaatgggaagaaagtg
gctgtaaatggacttagcgttaatttctatgaggggcaaatcacctcattcttggggcat
aatggagctggaaaaacaactaccatgtctatcctgactggattgttcccacccacctct
gggacagcatatattctgggcagaaatatcttcacagagatggatacgatcagaaagtca
ctagggatgtgtccacagcataatgtactttttgacatattgactgtggaggagcacatc
tggttttatggaaggctgaaggggctgactgaggaggaggtaaatgaagaaatgaagttg
atgatcgatgatgtggatttggtgcacaaacgtcgagaacaaacaaaaaatctctcgggt
ggcatgcaacgaaagctttcagtcgctatagcgtttgttggtgggtcaaaggttgttatt
ttagatgaaccaactgctggtgttgacccttattcccgccgaggaatatgggagctctta
cttaaatatagaaaaggccgcaccataatattatcaacccattacatggatgaggcggac
ctcctcggggatagaattgccattatctcccatggaaagctctgctgctgtggctcttca
ctgttccttaaaaatcatttaggaactggctattacctgactttagtgaaaaaagaaaat
gacaagacaacgccagccagctccagcagcaccaccattggtctgaggaagtatcagctt
tccagaataccccattcagaggatgatctcgtgttaagtatgtatgagtacaagttagag
ttcttgtggtgcagtgaatgtgtccctacctctgagcctggatgtcctaggtttaagcct
cgtttgctgcagagctgcgtcatagcagacgtgaacatgttaattaaaaatatctatgga
aatgttcccattaaaagagtcagatgttcaaggtccagtgagcacacactgcagccagtt
agtgaggaaggggattttgaactacctgacacagaacctgaacccaaggagaccgacttt
atgcaatgtatggaaggcagaggttcataccaattacgtggctggcagctcacccgacaa
cagttccattccttgttcatcaagcgcttcctgtatgcccgccgaagtcgtagaggactt
tttgctcagattgtgctacctgcattgtttgtgtttattgctctgttcttcagtatgatt
gtgcctccatttgggaaatatccaccattagaactgagtccctggatgtatggagaacag
tacactttcatcagtgatgactttccagaggatcctaccactcgcgatctgatcagtgca
ctcctcagtgaccctggatttggcaccaagtgtatggaaagtggaacaaatgaaagtatg
cagtgccaagaaggtggaactgattggataattccccaagtttcagaatcagccctgaag
atcttccgcagtggtaactggactatgcaaaatccatcccctgcgtgtcagtgcagctca
aagaagacccagaggatgttgcctttatgtggagaaggagcaggaggactcccgccccct
cagttgcagcgaaatactggggacattcttcagaatctaactggcaggaatgtatcggac
tacctcgtgaaaacctacccccagatcattagtaaaagtctgaaaactaagaagtgggtg
aacgagttcaggtatggaggattctcattgggagcacgaagttcccaggttttaccttcg
ctgaacgaagttaatatctccattattgagatcaggtcacgattgaatgtcacaaaggat
agttctatggaccgactgcttggaaacattggaaactttatcgaggggctgaacacaaat
aataatgtgaaagtctggttcaacaataaaggctgtcatgccatggtgagttttgtgaat
gttatgagcaatgcagtgctgagagcaaatcttccaccaggaaaagatcccagaatgttt
gggattactgcatacaatcacccactgaacctgaccaaagaacagttcactgaagtcgca
ctgataggtatctctgttaacttgctcgtctccatttgtgtcatctttgccatgtccttt
gtgccagccagctttgttctcttcctcattgaagaacgtgtcagcaaagccaagcacctt
cagtttgttagtggtgtgaaacctggcatttattggcttgctaattttgcatgggatatg
tgtaattacgcagtgtcagcaacactggtagtcgttatcttcatctgctttcaacaaaag
tcgtatgtatctgcccccaatttaccagcactgatcctcctgctgttcctttatggctgg
tccatcactcccctcatgtatccagcatcctttttgttcagtatccccagttctgcctat
gtggtgctaacctgtgtaaatctgttcatcggtatcaatggcagcgtggccacgtttgtc
ctcgagctcttccgtgacaagaaattggatgaggtcaatcaaatcctgaaaaaagttttc
cttattttcccacatttctgcctgggccgaggcatgatcgacatggtgaagaatcaagct
atggcagatgcatacgagaggattggggagaagatattcacatctccactctcctgggac
ctggtgggaaagaacctgtttgccatggctgtccagggagtcatcttctttctattcaca
atcctactgcagtacaaattcttcttcaaaatgagatctctgtctttaaaacttccacca
ttggaaacagaagatgaggatgtagctagagagaggcaaagggttacatatggtggaagt
gatggtgacattctagtcatcaaggatctcaccaaggtttacagaaggaaaaagaaacca
gctgtggaccgactatgtgtgggaattcctcctggagagtgttttggacttctggggatc
aatggagctgggaaaacatccacatttaagatgcttacaggtgacacagacgtcagcagc
ggtgaagccttccttgatggatatagcattctatctaacatccaggatgtgcatcagaac
atgggatactgccctcagtttgatgctgtgaacaaactgttgacgggtcgggaacatgta
gaattctactcacggctacgtggcattcctgagcacgaggttgctaaggtcactgaatgg
gctgtgaagaaattaggactctcacgctatgcagacagaccttctgggacgtatagcgga
ggcaacaagcggaaattgtcaactgccattgcactgattggatgcccaccagtcatcttt
ctggatgaacctacgacgggaatggatcccaaggccaggcgctttctctggaattgcatc
ctgagtgtgatcagagaagggagatcagtggtactcacctcacacagcatggaggaatgt
gaggcactgtgcacgaggatggccatcatggtgaatgggcgattccgctgtcttggcagt
gtgcagcacctgaagagcaggtttggagacggttacaccatcatcctgaggatggacagt
accacgctggattcatctaatgttgaggaattcatggtgtccacattcccaggctgcgtg
ttgaaggaaaagcaccacagcatgttgcaacatcagataccaacggggtgctgctccctg
gccaaaatcttcagtgccctcatgaccaacaaagaaaaactgaagattgaagactattca
gtgtctcaaactacattagatcaagtatttgtcaattttgccaaggaccaaagtgaagac
tactatttgaaggacattttcacacatggaccccaataccaggatacagtaaagcgcatc
acaaattttttagcagacgaaaacatgagggagagttcagtatga
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integrated database retrieval system
