Rhincodon typus (whale shark): 109936551
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Entry
109936551 CDS
T06055
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109936551 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109936551 (polr1b)
Enzymes [BR:
rtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109936551 (polr1b)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
109936551 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
109936551
NCBI-ProteinID:
XP_020390740
LinkDB
All DBs
Position
5:complement(15753914..15793369)
Genome browser
AA seq
1147 aa
AA seq
DB search
MADKWGQLCGEERLRPSLKNLTEPGLRMGRVGLDAEPEQEQQRRRALLELVAAHVDSFDQ
AVSEGLARAVQAIPPLEFNYRNERISLAFMDAFISTPMVSKGSICNDLRVYPAECRGRRS
TYKGKLTADISWSVNGVPKGIIKQSLGLIPIMVKSKLCNLYGLSPQDLIKHHEEAEEMGG
YFIINGIEKIIRMLIMPRRNFPIAMVRPKWKSRGPGFTQYGISMHCVKDEHTAINMNLHY
LDNGTIMVNFIYQKELFFIPLCFVLKAMVDFTDYQIYQELIKGKEDNSFFKSCVAQMLRT
VMMEGCTTKKQVLNYLGERFRVKLYLPEWYTNEQAAEFLFDQCLCIHLKSNVEKYYLLCL
MTRKLFAFAKDECQEENPDSLINHEVLTPGQLYLMFLKEKMEFWLQSTKLALDKKAQKGT
IQINSENLMKVFNLVADLSRPFEYLLATGNLRSKTGLGMLQDSGLCIVADKLNFIRYLSH
FRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHLTVICEIVTQTSSTV
SLPALLCGLGITPVDGRPSKPFSECYPVLLDGAVVGWVEKEMGPSIADTLRNFKVLQLKK
VPPWIEIVLIPMMDKPSIYPGLYLFTTMNRMMRPVRNLALGKQELIGTLEQLYMNIAITE
TDILSGVTSHQELFPHAMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLYTYSDRSD
NKLYRLQTPQSPLVRPHMYDYFNMDNYPTGTNAIVAVISYTGYDMEDAMIVNKASWERGF
AHGSVYKTEMIDLDQKVKQNDGIFVFGVKPGDKRTTQKLDDDGLPFIGAVLEYGDPFYSY
VNLNTGDSSIVYYKSKESCVVDNIKVCSNDNGTAMFKRVCITMRVPRNPTIGDKFASRHG
QKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAAMHGLCHDAT
PFMFSEENSALEYFGKMLQAAGYNYYGTERIYSGISGMELEADIFIGVVYYQRLRHMVSD
KFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLQDRLFNCSDRSVAH
VCIKCSSLLSPVLEKPPPSWSATRHRKYQCTLCHQSDTIEIVSVPYVFRYFVAELAAMNI
NIRLDVR
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagtgggggcagttgtgcggcgaagagcggctccggccgagcctgaagaac
ctgacagagccgggactgaggatggggcgagtgggcctggacgcggagccggagcaggag
cagcagcggcggagggccttgctggagttggtcgcggctcacgtggactcgttcgaccag
gcggtgagcgaggggctggctagggccgtgcaggccattcctccattggagttcaattat
agaaatgaacggatcagcctggcctttatggatgctttcatcagcacgcccatggtgtca
aaaggcagcatctgcaatgacctaagagtatacccagcggagtgtagaggacgacgaagt
acttataagggcaagttaactgcagatatcagctggtctgtgaatggtgtaccaaagggg
attattaaacagagccttggtttaattcctattatggtaaaatcaaagctctgtaatctc
tatgggctttctcctcaagatctcattaaacaccacgaagaagcagaggagatgggagga
tatttcataataaatggcatagagaaaatcattcggatgctgatcatgccacgacgaaat
tttcctattgctatggtgagacctaaatggaagagcagaggccctggctttacgcagtat
ggtataagcatgcactgcgtgaaggatgagcacaccgctattaatatgaaccttcattat
ctcgataacggcaccataatggtcaacttcatttaccagaaggaactcttcttcataccg
ctctgttttgtgcttaaggcaatggttgattttacagactaccagatttaccaagagttg
attaagggaaaagaggacaactcattctttaagagctgtgtggcacagatgttaagaacg
gtgatgatggaaggatgcactacaaagaagcaggtcctgaattacctgggagaacgattc
cgtgtgaaactttatctcccagagtggtacacaaatgagcaagctgcagaattcctattt
gatcagtgcctctgtatacatctaaaatccaatgtagagaagtattacttactctgcttg
atgacccggaagctgtttgcatttgccaaggatgaatgtcaggaagagaatccagatagc
ttgataaatcatgaagtgttgacccctggacagctctatttgatgtttttgaaggagaaa
atggagttttggttacagtccacaaaattagcattggacaaaaaggcccagaaagggact
atccagattaattctgaaaacctaatgaaagtgtttaatttagtggcagatctgtcacga
ccatttgagtatcttttggcgacaggaaacctgcgctcaaaaacaggtctgggaatgctg
caggattcgggtttgtgtattgtggcggacaagctgaattttattcgatatctttcccat
ttccgctgtgtgcacagaggagcagcctttgctaagatgagaactacctcagtacgcaag
ttactgccagagtcctggggcttcctgtgtcctgtgcacactcctgacggagagccctgt
gggttaatgaatcacttgactgtcatttgtgaaattgtgacccagacatcaagtacagtc
tctttgccagctttactctgtggactgggtattacgccagtggatggtagacccagcaag
ccattttctgagtgttacccagttctgttggatggtgctgtagttggctgggtggaaaaa
gaaatgggacctagtattgctgatacgctacgcaactttaaagtgctccagttgaaaaaa
gtccctccgtggattgaaattgttcttattccaatgatggataagcccagcatttaccca
gggttgtacctcttcaccactatgaatcggatgatgcggcctgtcagaaacctggccttg
ggaaaacaggagcttattgggactcttgagcagctgtacatgaatattgctatcactgag
acggatatcttgtctggagtaaccagccatcaggaactctttccccatgccatgctgagt
gttgtggctaatttcattccatattctgatcataatcaaagtcccaggaacatgtaccag
tgtcagatgggcaagcaaacaatgggatttccattatacacttattcagacagatctgac
aataaactctatcgccttcaaactcctcaaagtcctcttgtgcgaccacacatgtatgac
tactttaatatggataactatcccacagggacaaatgctattgtagctgtcatctcatac
actggatatgacatggaagatgctatgattgtcaacaaggcatcttgggagcgaggattt
gcccatggaagtgtttataagactgagatgatagaccttgaccaaaaggttaagcagaat
gatggcatctttgtgtttggtgtcaaacctggtgataaacgaacaactcagaaacttgat
gacgatggattgccatttatcggggctgtattggagtatggtgatccattttatagttat
gtgaatctcaatactggggatagttctatagtatactacaagagcaaagaaagctgtgtt
gtagataacattaaagtctgtagcaatgacaatggaacagcaatgtttaaacgggtgtgc
atcacaatgagggtccctcgtaatcccacaattggagataagtttgctagtcgacatggt
caaaagggcatcttgagtagattgtggccagcagaggacatgccgttcacagaaagtgga
atgacgccagacattctgttcaatccccatggattcccttcacgtatgaccatagggatg
ctgattgaaagcatggcagggaagtctgccgccatgcatggcctgtgccatgatgccacc
ccattcatgttctctgaggaaaattctgccctggagtactttgggaagatgttgcaggct
gctggctacaactactatggtacagaaaggatctacagtggcatcagcgggatggagctg
gaggcggatattttcatcggggtggtttactaccagcgcctgcgtcacatggtatctgac
aagtttcaagttagaactactggggcgagggataaagtgactaaccagcccttgggaggg
agaaatgtccagggtggtattcgatttggggagatggaacgtgatgccctgctagcacat
ggaacgtccttcttgcttcaagatcgcctgttcaattgctctgaccgatctgtagcccat
gtgtgcatcaagtgtagtagccttctgtcgccagtactggaaaagcccccgccatcatgg
tctgctacacgtcacaggaagtaccagtgtactctctgtcatcagtccgacaccattgag
attgtctctgtgccatatgtttttagatactttgtagctgaactggcagcgatgaacatt
aatattcgtcttgacgtgagatga
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integrated database retrieval system
