Rhincodon typus (whale shark): 109936575
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Entry
109936575 CDS
T06055
Name
(RefSeq) vascular cell adhesion protein 1-like
KO
K06527
vascular cell adhesion molecule 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
109936575
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtp04515
]
109936575
04090 CD molecules [BR:
rtp04090
]
109936575
04091 Lectins [BR:
rtp04091
]
109936575
Cell adhesion molecules [BR:
rtp04515
]
Immunoglobulin superfamily
VCAM
109936575
CD molecules [BR:
rtp04090
]
Proteins
109936575
Lectins [BR:
rtp04091
]
I-type lectins (Siglecs)
109936575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
ICAM1_3_5_D2
Adhes-Ig_like
Ig_5
C2-set_2
Izumo-Ig
ICAM_N
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
109936575
NCBI-ProteinID:
XP_020390767
LinkDB
All DBs
Position
10:21306040..21310575
Genome browser
AA seq
524 aa
AA seq
DB search
MAAGSSHPYRLLTLKFLLTTVCSFQIQMQPESLPWIRVGQELVLRCESKDCPSPSFVWRT
GIDKPLGGTVSSQGSVSTLTFSPVTRQNENTFICYVTCGEQKKQKSRAVNVYSFPDALIL
ETVGTLEVGRKSTVSCTVPDVYPPGRMEVKLLKGETVLAEKQHFGEESITLSTELIPSLR
DSGQEITCQAQLYIQELSKSLEDKLMLHVQYAPRMTQISVTPSATVREGQDLQLICTAES
KPPASFVWSKLLAQGWSIIARNESTLQLPRAQLTDSGTYRCEASNGLGQEARQLEIHVLA
EPRDTHLSISPSVVKEGQRVTVTCTSHSNPSAQIILSKKTESGQIKLDSKNGTFIIDAAH
SSDEGQYECEARNDLGTQIRNTELVVQVLTLWVHPSNLVSEGENVTIGCTVHSNFSANFT
WKKMENNSETILLSTNNSFSILQITQSDAGYYEVEVINELGSQTGFVTIQVNETKLYEKP
RGILETAYVGASLGSAGLLLFSTMYYIYRRNNCKGSYKMPTEQI
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggaagctcacacccgtatcgtttactaacactcaaattcctgctcacaacg
gtatgcagcttccaaatacagatgcagccggagtctttgccatggatccgggtcggccag
gagctggtactgaggtgtgaaagcaaggactgtccctctcctagcttcgtttggagaacc
ggaatcgacaaacctctcgggggcacggtgagcagccagggctcggtgtctaccctcacc
ttctccccggtgacccgtcagaacgagaacacattcatctgctacgtgacctgcggcgag
cagaagaaacagaaatcccgggcggtgaacgtttactctttcccagatgcgttgatcctg
gagacggtcgggacattggaagtgggcaggaagagcactgtgtcctgcaccgtgcctgat
gtttaccccccgggcagaatggaggtcaagttgctgaaaggagagacggtcctagctgaa
aagcagcacttcggggaagagtcgattaccctcagcactgaactgatcccttccctgcgt
gactcaggccaggagatcacctgccaggctcagctctacatccaggagctctcaaagtct
ttggaggacaagttaatgttacacgtccagtatgcacccagaatgacacagatttctgta
acgccatctgccacagtgagagagggtcaggatctccagctgatctgtactgctgagagc
aagccccctgccagctttgtgtggagcaaactattagcccagggttggtcaatcattgcc
cggaatgaatccactctgcagctgcccagagcccagcttacagactccggaacctaccgc
tgtgaagccagcaacgggctggggcaggaggccagacaactggagattcatgttctcgct
gaacctagagatacacatctctccatcagtccatccgttgtgaaagaaggacagcgtgtc
actgtcacctgcaccagccactcaaacccctctgctcagatcatactgagcaagaagaca
gaaagtggacagataaagttggactcgaagaatggaacatttataattgatgcggctcac
tctagtgatgaagggcagtatgaatgtgaagccaggaatgatctgggaacacagatccgg
aacacagagcttgtggttcaagttctgactctttgggttcatccttccaatttggttagt
gaaggtgagaatgtcaccatcggctgcactgttcacagcaatttctctgcaaacttcacc
tggaaaaaaatggagaacaacagtgaaactattttgctgtccacgaacaactccttttcc
atccttcaaataactcaaagtgatgctggatattatgaggttgaagtaatcaatgaattg
gggagtcaaactggatttgtgacaatacaagttaatgaaacaaagctatatgagaaaccg
aggggaatcctagaaacagcatatgtaggtgcttcacttggatctgcaggattattatta
tttagtacgatgtactatatctatcgcagaaataactgcaagggatcgtacaagatgcca
acagagcagatctag
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