Rhincodon typus (whale shark): 109936926
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Entry
109936926 CDS
T06055
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtp03009
]
109936926 (ddx55)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109936926 (ddx55)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
Pre-60S particles
Helicases
109936926 (ddx55)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Cas3-like_C_2
SBF_like
Motif
Other DBs
NCBI-GeneID:
109936926
NCBI-ProteinID:
XP_020391129
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All DBs
Position
24:46420438..46445567
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AA seq
579 aa
AA seq
DB search
MAELGEWEKLENGLHPRILQTLRELRFTHMTPVQSATIPLFMSNKDVAAEAVTGSGKTLA
FVIPILEILLKREEKLKNLQVGALIITPTRELAIQIDEVIRQFLVHFPQFSQILFIGGNN
PIEDVEKFKKQGGNIVVGTPGRLEDLFRRRSDGLDLAGCVKTLEVLVLDEADRLLEMGFE
ASLNTILGFLPKQRRTGLFSATQTQEIENLVRAGLRNPVRITVKEKGVAADSTQKTPVQL
HNYYMTCRTDEKFNQLVAFLRRHKREKHLIFFSTCACVEYYGIALDALVKNVQIMCIHGK
MKHKRNKIFTEFRQLQSGILVCTDVMARGIDIPEVDWVLQYDPPSSASAFVHRCGRTARI
GRHGNALVFLLPMEMAYVNFLSINQKCPIEEMKLLKDSADVLPKLKKLAVSDRAIFEKGM
KAFVSFIQSYAKHECNLIFRIKDLDFAAVARGFGLLKLPKMPELRGKSFPDFIPENIDTN
SIRYRDKNREKQRQKMLAKQQQERQQNEGKKKFVKNKPWSKQKTKRDKRKKQADKRKQDE
GSDMEDENIDELLNDTRLLKKLKRGKINEEEFEKQLLGT
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctgggcgagtgggagaagttagagaatgggctccatccgcggattttacag
actctccgggagctccgcttcactcacatgactccggtgcagtctgcaacaatccctctg
tttatgagcaacaaggatgtagctgcggaagctgtaaccggcagtggaaaaaccttggct
tttgtcattcctattttggagattcttctaaaacgggaggagaagttaaagaacctgcag
gttggtgcactcattattactccaacacgggagcttgctatccaaattgatgaagtgatc
agacagttcttggtacatttcccacagttcagtcagattcttttcattggtgggaacaat
ccgatagaggatgttgagaaattcaagaagcagggagggaacattgttgtgggcacccct
ggccgtttagaagacctgttcaggcggcggtctgatggtctggacttagccggctgtgtg
aagaccctggaagtcttggtactggatgaggctgacaggctgctggagatggggtttgaa
gccagcctgaacactatcctggggtttttgcccaagcagcgaagaacaggcctcttctca
gccacacagacccaggaaatagagaatctggtccgagcgggactccgtaatcctgtccga
atcacggtgaaggagaaaggagtggcagcagacagcactcaaaaaacgccagtccaactg
cacaactattacatgacgtgtcgtacagatgagaagtttaaccaattagtcgccttccta
cgccggcataaacgagagaaacatctcatcttcttcagtacatgtgcatgtgtggaatat
tatgggattgcattggatgccttggtgaaaaatgtacaaataatgtgcatccatgggaaa
atgaagcacaaacggaacaaaatatttactgagtttcggcaacttcaaagtggtattttg
gtttgcactgacgtcatggctcgtggtatagacatccctgaagttgactgggttctgcag
tatgaccctccaagcagtgccagtgcttttgtccatcgttgtggacggacagctcgtatt
ggtcgccatggcaatgcccttgtattcctgcttcctatggagatggcctatgtcaacttc
ctttccattaatcagaaatgtccgatagaggagatgaaactgctgaaagattctgctgat
gtcctcccaaagctgaagaagttggctgtgtctgaccgagctatcttcgaaaaagggatg
aaggcatttgtgtctttcattcagtcttatgctaaacacgagtgcaacttgatattccga
ataaaagatctggattttgctgcagttgctaggggctttggactgcttaaactccccaag
atgccagagctgagaggaaaaagttttcctgatttcattcccgagaatatagacacaaac
tccatccgatacagagacaaaaacagagaaaagcagaggcagaagatgttagcaaagcaa
cagcaggagagacaacagaatgaagggaaaaagaaatttgtgaaaaataaaccttggtca
aagcagaaaacaaaaagagacaagcggaaaaaacaagcagacaaaagaaagcaagatgag
ggatctgacatggaggatgagaatattgatgaacttctcaatgatacccgattgttgaag
aagctgaaaaggggtaagataaacgaggaggagtttgaaaagcagctgttgggaacataa
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