Rhincodon typus (whale shark): 109937106
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Entry
109937106 CDS
T06055
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04140
Autophagy - animal
rtp04142
Lysosome biogenesis
rtp04145
Phagocytosis
rtp04148
Efferocytosis
rtp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
109937106 (vps39)
04142 Lysosome biogenesis
109937106 (vps39)
04140 Autophagy - animal
109937106 (vps39)
04148 Efferocytosis
109937106 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109937106 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109937106 (vps39)
Membrane trafficking [BR:
rtp04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109937106 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
VPS18_solenoid_2nd
Clathrin
Motif
Other DBs
NCBI-GeneID:
109937106
NCBI-ProteinID:
XP_020391304
LinkDB
All DBs
Position
8:77507713..77601013
Genome browser
AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCIAAWEDRLLVGTKPGHLLLYRIKKELGTNRFEVLLEKSNK
NFSKKIQQLYVVSQFKILISLLENNIYVHDLLTFQQITMVTKAKSASLFSCDLKRSDSDE
LILNMCVAVKKKLQLYYWRDREFHETQADFSVPDVPKSMAWCENSICVGFKRDYYLIRLD
GKGSIKELFPTGKQLEPLVTPLDDQKVAVGQDDLTVVLNKDGVCTQKCALNWTDIPLAME
HQSPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSGGPNIVYVASNHFVWRLVPVSI
ATQIRQLLQDKQFELALQLAKMKDDSDSDKWQQIHHIQNLFAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPADYRKQLQYPNPLPTLSTAELEKAHLALIDYLTQKRTHLVKQL
HDSEPSTTSPLVEGTPIIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEES
EHVLKKAHKYSELIILYEKKGLHEKALQVLLDQAKKANSPLKGHERTVQYLQRLGKENLN
IIFEFSVWVLKGCPEDGLKIFTEDLPEVENLPRIKVLDFLKDSCKELAIPYLEHIIYIWD
ETAPVFHNCLIQLYREKVQALMKEYLNSLPEDEIPVPAGNEEGELGEYRNKLLCFLEIST
HYQPSKLISDFPFDGLLEERALLMGRMGLHEQALFIYVHILKNIKMAEEYCHKHYDLNKE
ADKDVYLSLLRMYLSPPDIHWVGPIRMEIAEPQANLQAALQVLELHHSKLDTTKTLNLLP
ANTQIREIRVFLENVLEGNAQKRRCNQVMKGLLHAEFLRIQEQRIYHQEVKCIITEEKIC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRKVCPTET
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgtacgagccggtgccgattttggagaagctgcctttgcaaatcgattgc
atagcggcctgggaggataggcttcttgtcggcactaagccaggacatctcctcctctac
aggatcaagaaggaattaggtaccaacagatttgaagtgttactagaaaagtctaacaag
aacttttcaaagaaaattcaacagttatatgttgtatcccaatttaaaatactgatctct
ctcctggaaaataatatttatgttcatgacttactcacattccaacaaattactatggtt
accaaggccaaaagtgccagtctgttttcgtgtgatttaaagcgatctgacagtgatgag
ctgattctgaatatgtgtgtagctgtgaagaagaaacttcagctctactactggcgggac
cgagagtttcatgaaacgcaggcagatttcagcgttcctgatgttcctaagtccatggct
tggtgtgagaattccatctgtgtgggctttaaaagggattattatctaatccggttggat
ggaaaaggctcaataaaggagcttttcccaactgggaagcaactagagcctcttgtgact
cccttggatgaccaaaaggtcgcagttgggcaagatgatttaacggtggtgctgaataag
gatggagtctgcactcagaaatgtgccctgaactggacagatattcctcttgccatggaa
catcagtcgccttatatcatagcagtgctaccacgatatgtggagatccgtacctttgag
ccacgcctgctggtacagagtgtggagctgcagaggccacgttttatcacatcaggaggg
cctaacattgtttatgtggctagcaatcactttgtatggcgactggtaccggtttcaatt
gcaactcagatccgacagcttcttcaggacaagcaatttgaattggccttgcagcttgct
aaaatgaaagatgactccgacagtgataagtggcagcagattcaccatattcagaatctg
tttgcatttaatctgttttgccaaaaacgctttgatgactccatgcaggtctttgctaag
cttggcacagatcccactcatgtaattgggctgtatccagacctgttgccagctgactac
aggaaacaacttcagtatccaaatcctcttcccacactatccaccgcagaactggagaaa
gcacacttagcacttatagactacttgacacagaaacgaacccatctggtaaagcaattg
catgattcagaaccttctaccacgtcacccctggtggaaggaacaccaatcatcaagtcc
aagaaaaaattgctccagatcattgatacaacattactgaagtgttatcttcatacgaat
gtggcacttgtggcccctctgttacggttggagaacaatcactgtcacattgaggagagt
gaacatgtactgaagaaagcgcacaaatacagcgagctgatcattctgtatgaaaagaag
ggtctgcatgagaaagccctgcaggttctcctagatcaggcaaagaaagccaattcacca
ctaaaaggccatgagcgaactgtgcagtacctccaacgactggggaaagagaacttgaat
attatttttgagttttctgtttgggtcctaaaaggatgtccggaagatgggttaaagata
tttactgaggatctgcctgaggtggaaaacttaccaagaatcaaagtgttggactttcta
aaggatagctgtaaggaacttgctattccatacctggagcatattatctatatctgggat
gaaactgcaccagtcttccacaactgcctgatccagctatatcgtgagaaggtgcaagcc
ctcatgaaggaatacctcaattctctgcctgaggatgagatccctgttcctgctggaaat
gaagaaggggagttgggagagtacaggaacaagctgttgtgtttcttagaaatttccacg
cattatcaacccagcaagctcatcagtgactttccgtttgatgggttactggaggagcga
gcattactgatgggtcggatgggtctacatgaacaagccctttttatttatgttcacata
ctgaagaatattaaaatggcagaagagtactgtcacaaacattatgacttgaacaaggaa
gctgacaaagatgtatatctttctctactacgtatgtacctgtcgccacctgacattcat
tgggtgggaccaatccggatggaaatagcagagccacaggcaaatcttcaggctgcacta
caagtactagaactgcaccacagcaaacttgacaccacaaagactttgaacctgctacct
gccaacacgcaaatccgggagatccgagtatttctggagaatgttcttgaaggaaatgct
cagaaacgacgctgcaatcaagttatgaaaggtctcctacatgcagagttccttcgtatc
caggagcagagaatttatcatcaagaggtgaagtgcatcataacggaggaaaaaatctgt
cgagtctgcaagaagaaaattggaaacagtgctttcgctcgttacccgaatggagttgtg
gtccactatttctgctgcaaagaccgcaaggtttgtcccacagagacataa
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