Rhincodon typus (whale shark): 109937199
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Entry
109937199 CDS
T06055
Name
(RefSeq) LIM domain-containing protein 1-like isoform X1
KO
K16682
LIM domain-containing protein
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
109937199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109937199
03036 Chromosome and associated proteins [BR:
rtp03036
]
109937199
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109937199
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
109937199
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LIM
zf-ChsH2
Motif
Other DBs
NCBI-GeneID:
109937199
NCBI-ProteinID:
XP_048472244
LinkDB
All DBs
Position
2:complement(142417769..142467640)
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AA seq
678 aa
AA seq
DB search
MDKYEDLGLEASKFIEDLNMYEASKDGLFRVNRESCKPEFEETRRVFAFKMNKIHQQRQQ
EMARMGLVAQPGRLNGAYPSPQPPSEADRPPSSERSARLQKRYSGEGAAKPPVAGAGGPV
PPEPHRLNRYPQEPGPRTGSEGEPPGNRHSASTRPDYPQSSPRTSWNQETRSGVSSPRSS
VISSDPALYSPTKGVPDQTHMGSLKSAPSPRSSVISSDPAPYCPTKGIPDQAHMGSLKST
PRSSLISSDPARYSPTKGIPDQTHVGSLKSSPRSSVISSDPARYSPTKGIPDQTHLGSLR
SSPRSSVISSDPAPYSPTKGIPEQTHLGSLKHTPSPRSSLLQYGPLPSSPTVPEPDAYRP
QGQEEPPRCPDSRPATLPEGDTDPRGADGGRGGRNQATPGQNQLPLFPQDADYKLAPGLP
EPRQESSPRVRLPCQTLHVQPATGPSRAELKVEALTQRLEQEMDANPKAEYFGTCVKCSK
AVYGAHQACQAMGNLYHDACFTCSACSRRLRGKAFYFVNGRVYCEEDFLYSGFQQSADKC
FACGHLIMDMILQALGKSYHPGCFRCVICNECLDGVPFTVDTENKIYCIRDYHKVLAPKC
AACGQAILPAEGCDETIRVVSMDKDYHVECYHCEDCGLELNDEEDHRCYPLDGHLLCHTC
HLKHINSRTPGTIYQPKY
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggataaatatgaggatttggggctggaggccagtaaattcatcgaagatttgaacatg
tatgaagcttccaaggatgggctgttccgtgtgaacagggaaagttgtaagcccgagttt
gaggagaccaggcgtgtgtttgcctttaagatgaacaagatccatcagcaaaggcagcag
gagatggcgaggatggggctggtcgctcagcccggcaggttaaacggggcttatcctagc
cctcagccccccagtgaagccgacaggccgcccagctccgagcgatccgcccgcctccag
aagcgctacagcggcgagggagccgccaaacccccggtcgctggggctggaggcccggta
cccccggagcctcaccggctcaatcgttaccctcaggaacccggccccaggaccggctcg
gagggtgagccccccggcaacaggcactcggcgtccactcggcccgactacccccagtct
agccccaggaccagttggaatcaggagaccaggtcgggggtctccagccccagatccagt
gtgatctccagtgatccagccctttatagtcccaccaagggggttccagaccagacccac
atgggtagcctcaagtctgcccccagccccagatccagtgtgatctctagtgatccagcc
ccttattgccccaccaaggggatcccagaccaggcccacatgggtagcctcaaatctacc
cccagatccagtctgatctctagtgatccagcccgttatagccccacgaaggggatccca
gaccagacccacgtgggtagcctcaaatccagccccagatccagtgtgatctctagtgat
ccagcccgttatagccccaccaaggggatcccagaccagacccacctgggtagcctcaga
tccagccccagatccagtgtgatctctagtgatccagccccttatagccccaccaagggg
atcccagagcagacccacctgggtagcctcaaacatacccccagccccaggtccagcctc
ttgcagtacgggccccttccctccagccccacggtcccggagcctgatgcctaccgaccc
caagggcaggaagagcccccgcgatgcccggactcgcggccggccactctgcccgaaggg
gatactgacccaaggggagctgacggcggccgagggggtagaaaccaggccactccgggc
cagaaccagctccctctgttcccgcaggatgcggactataagctggcgcctggactgccc
gagccccgccaggaatctagccccagggtccgcctgccctgtcagaccctccatgtacag
ccggccactggaccatccagggctgaactcaaagtcgaagctctcacccagcgcctggag
caggaaatggatgcgaatcccaaggcggagtattttggaacgtgtgtgaagtgtagcaaa
gcagtttatggagcgcatcaggcttgtcaagccatggggaacttgtaccatgacgcctgt
ttcacctgcagtgcctgtagccgacggctgcggggaaaagctttctactttgtcaacggg
agagtgtactgcgaagaggattttctgtactctggttttcagcaatctgctgataagtgt
tttgcctgtggccacttgataatggatatgatcctgcaggctttgggtaagtcctaccat
cctggatgtttccgctgtgtcatctgtaatgagtgcctggacggtgtacccttcactgta
gatactgagaacaagatctactgcatccgagactaccacaaagtgttagctccaaagtgc
gctgcgtgtggccaggccattctgccagcagagggctgtgatgaaaccattcgggtggtc
tctatggataaagattaccacgtggagtgctatcattgtgaagactgtggcctggagctg
aatgatgaagaggatcaccgttgctaccccttggatggacacttgctctgtcacacatgt
cacctgaagcacattaacagtagaacacctggcaccatctaccagcccaagtactag
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