Rhincodon typus (whale shark): 109937280
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Entry
109937280 CDS
T06055
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109937280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109937280
03036 Chromosome and associated proteins [BR:
rtp03036
]
109937280
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109937280
Coactivators
SAGA/TFTC/STAGA complex
109937280
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109937280
STAGA complex
109937280
TFTC complex
109937280
SAGA complex
109937280
SLIK complex
109937280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
DUF3275
Motif
Other DBs
NCBI-GeneID:
109937280
NCBI-ProteinID:
XP_048475985
LinkDB
All DBs
Position
45:complement(3113024..3132695)
Genome browser
AA seq
511 aa
AA seq
DB search
MITAPPSPLSGKDKKKSLLDGAVLKLKPRTTHELSVEQQLYYKEITEACVGSCEAKRAEA
LQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLH
ELIPAVVTCIVSRQLCLRPDVDNHWALRDFAARLMAQICKNFSTTTNNVQSRITKTFTKS
WLDDKTPWTTRYGCIAGLAELGHDVIKTLIIQRLQIEGERIRAVLEGPVVSNIDKIGADH
VQSLLLKHCAPVVAKIRSPPDNQESYKTDYGYLGPILCTHVVKARAQAAMQAQQVNRTTL
TITQPRPTLTISQSPQTSRAPSIIKVPSSITLPMQTLVSARPSTPTQPSPPATKFIMMSS
ASGSSSTQQPRPTLTISQSPQSSQPSTSPSIFKVPSSITLPMQTLLTRPSTPTQSSPSPT
NYIVMSSSSTSSSTQQVITLRTTPCGTGSVSPVTTTVANIQPIVKLVSTSQTAPSSTVTG
STQKYIVVSLPSASESKAQSSNNSLQQHSPK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgataacggctcctccctcccctctctcaggtaaagataaaaagaagtctctgctggac
ggggctgttctgaaactgaaaccgaggaccacgcacgagctgtctgtggagcagcagctg
tattacaaggagataacagaggcttgtgtcggctcctgcgaggctaaacgtgcagaggcc
ctccagagcatagccactgacccgggcctgtaccagatgttacccagattcagcaccttc
atatcagaaggggtgcgtgtgaatgtggtacagaataacctggccttgctgatctacctg
atgcggatggtgaaggcgctgatggataatcctacgctgtacctggagaaatacttacac
gagctgatccccgcggtggtgacctgcatcgtgagccgccagctgtgcctgcgccctgac
gtggacaaccactgggctctccgtgacttcgctgcccgcctcatggcgcagatctgcaag
aacttcagcaccaccacgaacaatgtccagtcccgcatcaccaagaccttcaccaagagt
tggctggatgacaagaccccctggacgacgaggtatggctgcatcgcaggattggcggag
ctgggccacgatgtgataaagactctgatcatccagaggctgcagatcgaaggggagcgt
atccgagctgtactggaaggaccggtcgtcagtaacatcgataagattggagcggatcac
gtacagagcctgttactgaaacattgcgcaccggttgtggcgaagatccgatctcctcct
gacaaccaggagtcctataagaccgactatgggtacctgggccccattttgtgtacccat
gtggtgaaagcccgtgcccaggctgccatgcaggcccagcaggtgaacaggacaaccctg
accatcacccagcctcggcccacgctgacgatatcgcagtccccacaaacgtcgcgggcc
cccagcatcatcaaagtgcccagctccatcacgctgcccatgcagactctggtctctgcc
cggccgtccaccccaactcagccctcccccccggcaaccaagttcatcatgatgtcttcg
gcgtcgggttcctccagcacgcagcagcccagacccaccctgacgatctcccagagcccg
cagtcgtctcagccctcaaccagccccagcatcttcaaggtgcccagctccatcacactg
ccaatgcagactctgctaacccgcccatccaccccgacccagtcgtctccgtcgccgacc
aactacatcgtgatgtcctcgagctctacttcctccagcactcagcaggtgatcacattg
aggacaactccgtgcgggacaggcagcgtgtcacctgtcaccaccacagtcgccaacatt
caaccgattgtcaaactggtctctacctctcagactgcgcccagcagcacggtgactggg
agcacccagaaatacattgtggtgtctctgccctcagcctcggaaagcaaggcccagtcc
agtaacaactctttacagcagcactcgccgaaatga
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