Rhincodon typus (whale shark): 109937280
Help
Entry
109937280 CDS
T06055
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109937280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109937280
03036 Chromosome and associated proteins [BR:
rtp03036
]
109937280
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109937280
Coactivators
SAGA/TFTC/STAGA complex
109937280
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109937280
STAGA complex
109937280
TFTC complex
109937280
SAGA complex
109937280
SLIK complex
109937280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF6_C
DUF3275
Motif
Other DBs
NCBI-GeneID:
109937280
NCBI-ProteinID:
XP_048475985
LinkDB
All DBs
Position
45:complement(3113024..3132695)
Genome browser
AA seq
511 aa
AA seq
DB search
MITAPPSPLSGKDKKKSLLDGAVLKLKPRTTHELSVEQQLYYKEITEACVGSCEAKRAEA
LQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLH
ELIPAVVTCIVSRQLCLRPDVDNHWALRDFAARLMAQICKNFSTTTNNVQSRITKTFTKS
WLDDKTPWTTRYGCIAGLAELGHDVIKTLIIQRLQIEGERIRAVLEGPVVSNIDKIGADH
VQSLLLKHCAPVVAKIRSPPDNQESYKTDYGYLGPILCTHVVKARAQAAMQAQQVNRTTL
TITQPRPTLTISQSPQTSRAPSIIKVPSSITLPMQTLVSARPSTPTQPSPPATKFIMMSS
ASGSSSTQQPRPTLTISQSPQSSQPSTSPSIFKVPSSITLPMQTLLTRPSTPTQSSPSPT
NYIVMSSSSTSSSTQQVITLRTTPCGTGSVSPVTTTVANIQPIVKLVSTSQTAPSSTVTG
STQKYIVVSLPSASESKAQSSNNSLQQHSPK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgataacggctcctccctcccctctctcaggtaaagataaaaagaagtctctgctggac
ggggctgttctgaaactgaaaccgaggaccacgcacgagctgtctgtggagcagcagctg
tattacaaggagataacagaggcttgtgtcggctcctgcgaggctaaacgtgcagaggcc
ctccagagcatagccactgacccgggcctgtaccagatgttacccagattcagcaccttc
atatcagaaggggtgcgtgtgaatgtggtacagaataacctggccttgctgatctacctg
atgcggatggtgaaggcgctgatggataatcctacgctgtacctggagaaatacttacac
gagctgatccccgcggtggtgacctgcatcgtgagccgccagctgtgcctgcgccctgac
gtggacaaccactgggctctccgtgacttcgctgcccgcctcatggcgcagatctgcaag
aacttcagcaccaccacgaacaatgtccagtcccgcatcaccaagaccttcaccaagagt
tggctggatgacaagaccccctggacgacgaggtatggctgcatcgcaggattggcggag
ctgggccacgatgtgataaagactctgatcatccagaggctgcagatcgaaggggagcgt
atccgagctgtactggaaggaccggtcgtcagtaacatcgataagattggagcggatcac
gtacagagcctgttactgaaacattgcgcaccggttgtggcgaagatccgatctcctcct
gacaaccaggagtcctataagaccgactatgggtacctgggccccattttgtgtacccat
gtggtgaaagcccgtgcccaggctgccatgcaggcccagcaggtgaacaggacaaccctg
accatcacccagcctcggcccacgctgacgatatcgcagtccccacaaacgtcgcgggcc
cccagcatcatcaaagtgcccagctccatcacgctgcccatgcagactctggtctctgcc
cggccgtccaccccaactcagccctcccccccggcaaccaagttcatcatgatgtcttcg
gcgtcgggttcctccagcacgcagcagcccagacccaccctgacgatctcccagagcccg
cagtcgtctcagccctcaaccagccccagcatcttcaaggtgcccagctccatcacactg
ccaatgcagactctgctaacccgcccatccaccccgacccagtcgtctccgtcgccgacc
aactacatcgtgatgtcctcgagctctacttcctccagcactcagcaggtgatcacattg
aggacaactccgtgcgggacaggcagcgtgtcacctgtcaccaccacagtcgccaacatt
caaccgattgtcaaactggtctctacctctcagactgcgcccagcagcacggtgactggg
agcacccagaaatacattgtggtgtctctgccctcagcctcggaaagcaaggcccagtcc
agtaacaactctttacagcagcactcgccgaaatga
DBGET
integrated database retrieval system
