Rhincodon typus (whale shark): 109937407
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Entry
109937407 CDS
T06055
Symbol
tbpl1
Name
(RefSeq) TATA box-binding protein-like 1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109937407 (tbpl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109937407 (tbpl1)
03021 Transcription machinery [BR:
rtp03021
]
109937407 (tbpl1)
Transcription factors [BR:
rtp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
109937407 (tbpl1)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109937407 (tbpl1)
RNA polymerase III system
TFIIIB
109937407 (tbpl1)
RNA polymerase I system
SL1/TIF-1B
109937407 (tbpl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
Motif
Other DBs
NCBI-GeneID:
109937407
NCBI-ProteinID:
XP_020391576
LinkDB
All DBs
Position
5:37140462..37189196
Genome browser
AA seq
186 aa
AA seq
DB search
MEPDNDIALDILITNVVCVFKTRCHLNLRKIALEGTNVIYKRDVGKVLMKLRKPRITATI
WSSGKIICTGATSEEDAKTGARRLARLLQKLGFQVKFAGYKVVNVLAVCTMPFEIRLPEF
TKRNRPIASYEPELHPAASFRVKALKATLQIFSTGSITITAPSIQCVATAVEQTYPLIFE
SRKMIK
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atggaacccgacaatgatattgcactggatattttgataacaaacgtagtctgtgtcttt
aaaacaagatgccatttaaatctccggaagattgcactggaaggaacgaatgtgatctac
aaaagagatgttggaaaggtattaatgaaactgaggaaacctaggataacagccacaatc
tggtcctcagggaaaattatatgcactggagctacgagtgaagaagatgcaaaaactggt
gctcgaagattagcccgccttctgcagaaactgggttttcaggtaaaatttgctggctat
aaagttgtcaatgtcctggctgtatgcacgatgccatttgaaataaggctaccagaattc
acaaaaagaaatcggccaattgcaagctacgagccagaactgcatcctgcagcatctttt
agagttaaagcgttaaaagccacacttcaaattttttccaccggcagtataacaataaca
gcacccagtatacagtgtgttgcgactgcagtggagcaaacctatcctttaatctttgaa
tcccgaaagatgatcaaataa
DBGET
integrated database retrieval system