Rhincodon typus (whale shark): 109937609
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Entry
109937609 CDS
T06055
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109937609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109937609
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109937609
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109937609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
TRIM_CC
PRY
zf-C3HC4_4
RING_XB3-XBAT31
zf-C3HC4
FN3_DSCAM-DSCAML_C
zf-RING_2
Pur_ac_phosph_N
zf-C3HC4_3
zf-RING_5
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
109937609
NCBI-ProteinID:
XP_048458486
LinkDB
All DBs
Position
11:65662312..65975887
Genome browser
AA seq
738 aa
AA seq
DB search
MAAPVSTSIGTGSPFNQTYILIGSDLDIAEQLNHSKPDGALADIKRLNVRDTDTPVPDSV
RGSVMNQNPSKDFRELQLLAKWRVSSPASLDFADDTGLLCLKMETLESELTCPICLELFE
DPLLLPCAHSLCFSCAHRILVSHCASNESVESIAAFQCPTCRYVIALNHRGLEGLKRNVT
LQNIIDRFQKASTVSGPNSPGESRRERPFDGSTMTAVERIPCQFCEQDPPRAAVKTCVTC
EVSYCDGCLKATHPSKKPFTGHRLIEPVPDSHLRGLMCLEHESEKVNMYCVTDEQLICAL
CKLVGRHRDHQVAALGDRFEKIKVNATRQEDKLTEECDQLIEIIQQRRQIIGTKIKEGKV
VRLRKLAQQIANCKQCIERSGSLITQAEQTLKETDHARFLQTAKNISERVSMATASSQVL
IPEINLNDTFDTFALDFSREKKMLESLDYLTAPNPPAIREELCTASHDTITVHWTSDDEF
SVVSYELQYTIFTGLANVVSLCSSADSWMIVPNIKQNHYTVHGLQSGTKYIFVVKAINQA
GSHNSEPSRLKTNSQPFKLDPKSAHKKLKVSHDNLSVERDETTSKKSHTPERFTSQGSYG
ITGNVYIDSGRHYWEILIGGSTWYAIGIAYKSAPKHEWIGKNAFSWVFCRCNNSWVARHN
SKEIPVEPSPHLRRLGLLLDYDNGSLSFYDAVNAQHLYTFDIAFVQPVCPTFTVWNKALT
VLTGLPIPDHLDCTEQVP
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaccagtatcaacctccattggaactggaagcccatttaaccagacttatatt
ttgattggttctgatttggatattgctgagcaacttaaccattccaaaccagatggagcc
ctggctgacataaaaaggttgaatgtcagggatactgacactccagtgcctgattctgta
cggggcagtgttatgaaccagaacccctcaaaagacttcagggagctgcagcttctggca
aaatggagagtcagctcgccagcttccctggattttgctgacgacacaggattgctttgc
ctgaagatggaaacactggagtcggaactgacctgcccaatctgtctggagctcttcgaa
gacccactgcttctaccgtgcgcccacagcctgtgtttcagctgcgcccaccgcatcctg
gtctctcactgtgcgtcgaacgagagcgtggagtcaatcgctgcctttcagtgcccgacg
tgccgctatgtcattgccctcaaccaccgcggcttagaggggctgaagcgtaacgtcact
ttgcagaacatcatcgaccgctttcagaaggcatccacggtcagtggtcccaactccccg
ggcgagagccggcgcgagcgccccttcgacggcagcaccatgaccgcggtggagcgcatc
ccgtgccagttctgcgagcaggaccccccgcgggcagctgtgaaaacctgtgtgacctgc
gaggtctcctactgcgacgggtgcctgaaggccacccacccgagcaagaaacccttcact
gggcaccggctcatcgagcccgtgcccgactcgcacctccgtggcctcatgtgcctggag
cacgagagcgagaaggtcaacatgtactgcgtaaccgacgagcagctcatctgcgctctc
tgcaagctggtggggcgtcaccgagatcaccaagtggcagcactcggagatcgctttgag
aaaataaaggtgaatgcaacacgtcaagaagacaaactaactgaagagtgtgaccaattg
attgaaatcattcagcaaagaagacaaatcattggcacaaaaattaaggaaggaaaggtc
gtacgattgcggaaactggcccagcaaatcgcgaactgcaagcagtgcattgaacgatca
ggctccctcatcactcaagcagagcagacactaaaagagactgatcacgctcgcttcctg
cagacagctaaaaatatctctgaaagagtctccatggcaactgcatcttctcaagtgctc
atcccagaaatcaacctaaatgatacatttgacacatttgcattagacttttcccgggag
aagaagatgctggagagccttgattacctcacagctccgaatccaccagctatccgagag
gagctatgcactgcctcacatgatacgatcacagttcactggacctctgatgatgaattc
agcgtggtgtcatacgagcttcagtacaccatcttcaccggcctggccaatgttgttagt
ttgtgtagctcggctgacagctggatgattgtcccgaacatcaagcagaaccactacaca
gtgcatgggctgcagagcggcaccaagtacatcttcgttgtcaaggctataaaccaggcc
ggcagccacaacagcgaaccctccaggctcaagaccaacagccagccgttcaagctggat
cccaaatccgcgcacaagaagctgaaagtctcccacgacaacctcagtgtggaacgggat
gagaccacctcaaagaagagccacactccagagcgtttcaccagccaagggagctatggg
ataactggcaatgtctacatcgacagcggccgtcattactgggagatcctcattggagga
agcacatggtatgcaattgggatcgcctacaagtcagcaccaaaacatgagtggattggg
aagaacgccttctcctgggttttctgccggtgtaataacagctgggttgcaaggcacaat
agtaaggagatacctgtggagccctcgccccacctccgacgcctgggtcttttactggac
tacgacaatggatctttgtccttctacgatgctgttaatgctcagcacctatacaccttt
gacattgcatttgttcagcctgtgtgccccaccttcactgtgtggaacaaagccctcaca
gtcttaacggggctccctataccggatcacctggattgcacagaacaggtaccttag
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