Rhincodon typus (whale shark): 109937789
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Entry
109937789 CDS
T06055
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1 homolog A-like isoform X1
KO
K15516
fragile X mental retardation protein
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109937789
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109937789
Factors involved in mRNA localization
Other mRNA localization factors
109937789
mRNA cycle factors
Stress granule specific factors
109937789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
KH_1
KH_KhpA-B
KH-I_KHDC4-BBP
FXR_C3
Rotavirus_VP3
Motif
Other DBs
NCBI-GeneID:
109937789
NCBI-ProteinID:
XP_048476115
LinkDB
All DBs
Position
45:complement(1286987..1308777)
Genome browser
AA seq
569 aa
AA seq
DB search
MERLRPVNPNKTATKTMFHKHTIPVPEDLKEACANENAHKDFKKAVGAHSIVYNHSTGEL
VLLSINESTVKRAGLLSDMHFRSIRTKLMLMSRNEEATKHLETTKQLAAAFQEEFRVRED
LMGLAIGTHGANIQQARKVPGVTAIELDEDTCTFRIYGETPEAVKQARGYLEFSENSVQV
PRSLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNDKRLPREEGMVPFTFVGTKENLVNAQ
VLLEYHLSYLTEVEQLRLERLQIDEQLRQIGMGYRPLSTRADKERGYMTDDSTASSIHSS
RSYSGRGRGRRDNNSDFSNASETESERRDELSDWSLGQADEDRDRRQGSDPNRRRPAGGR
GRGGPPSGRGRGGGRGGTSSISAVLKDPDSNPYSLLENAETEQAGDTDASESHANMSRRR
RSRRRRTDDDATMMDGVVESDTASVNENGVDESEGRPPRRNRSRRRRNRGNRLDGSLSRD
RQPVADYISRAESQSRQCVSQKEQTEGAPEQEPKEKQLERVDPSDEPSAVPNGPTNSLSD
SATKTAGSSQECGRAGATIKQQAVVNGVS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcttcgccctgtcaatcctaacaagactgccaccaagaccatgttccacaaa
cacaccatcccagtgccagaggaccttaaagaggcctgtgcaaatgagaatgctcacaag
gatttcaagaaagctgtcggagcccactccatcgtgtacaaccacagcaccggcgagctg
gtactcctgtctattaatgagtcaactgtgaaacgggcgggcttgctgagtgatatgcac
ttccgcagtattcgtaccaaactgatgctgatgtcccgaaacgaggaggcaactaaacac
cttgagaccaccaagcagctggcagctgctttccaggaggagttccgtgtccgggaggat
ctgatggggcttgcgattggaacacacggtgccaacattcagcaggccagaaaggtacct
ggggtgacagcaattgaactggatgaggacacatgtacattccgaatatatggagagaca
ccagaagcagtaaaacaggctcggggttacctggaattctctgagaactccgtccaagtg
ccacgaagcttggttggcaaagtgattggcaagaatgggaaagtaattcaggagattgtg
gacaagtctggtgtggtgagggttcggattgaaggagacaatgacaagagactgcccagg
gaggagggtatggttcctttcacatttgttggcaccaaggagaatctagtgaatgctcaa
gtgctgctggagtatcacctgtcctatctgacggaggtagagcagctgcgattggagagg
ctgcagatagacgaacaactccgacagattggcatgggataccgtccactgtccacgcgt
gcagacaaggagcgtggctacatgacagatgacagcactgcctcttccatccacagctcg
agatcctacagcggccgaggacgaggaaggcgagacaacaactccgacttctccaatgct
tccgagaccgaatcagagcgcagggacgagctgagtgactggtcgttgggccaggccgac
gaggatcgggatcgcaggcagggatcggatcctaaccggaggaggccagctggaggccgt
gggcgaggaggtcctccctctgggagagggcgtggaggaggcagaggtgggacatcatcg
atcagtgctgtgctgaaggatcccgacagcaatccctacagcctgctggagaacgccgaa
actgaacaagccggcgacacggatgccagtgagtcgcacgccaacatgagccggcgccgt
aggtctcgcagacgccgcaccgatgatgatgccaccatgatggatggggttgtggagtcc
gacactgcgtctgtcaatgagaacggtgtggacgaaagcgaggggcgacctccccgaagg
aaccggagccggcggcgccgcaatcgtggaaacagactggacggttccctgagccgagac
aggcagccagtggccgattatatttctcgtgccgagtcgcagagcagacagtgcgtctcg
caaaaagaacaaaccgagggagcccctgagcaggagccgaaggaaaaacaactggagcgg
gtggaccccagcgacgagcccagtgccgtgcccaacggccccaccaatagtctgagcgac
agcgccaccaagacagcgggcagctcccaggagtgtgggagagccggtgccaccatcaag
cagcaggctgtggtcaacggtgtttcgtaa
DBGET
integrated database retrieval system