Rhincodon typus (whale shark): 109937816
Help
Entry
109937816 CDS
T06055
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X2
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109937816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109937816
03021 Transcription machinery [BR:
rtp03021
]
109937816
03036 Chromosome and associated proteins [BR:
rtp03036
]
109937816
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Helix-turn-helix
ARID
109937816
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109937816
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109937816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
109937816
NCBI-ProteinID:
XP_020391907
LinkDB
All DBs
Position
27:13776438..13899965
Genome browser
AA seq
2070 aa
AA seq
DB search
MAAPVSALRDTEMSQAKAGELAALKPGTGPGPTAEQEHHLPGNGSEPGAAARETFSNHRL
SAAPVPGEHSDEDSGHPPHGEQDGASSSEQSNGGAGSGEPEPGRATATSLALLSGDQRFD
HSSNSGGAVPLGNANPGPSPGPGAVPPTGYGYNHYRGPFHQHGGQQSPGMGAALQPGGLD
SFQPNSHEAFSGHYNNYTTSYPAARSGYMNQNYGLNSPRAGAAGPKALASGMVASFQRFG
GQQQQSAQGPGLQQHQQPQTASSTPTLNQLLTSPSGARAFTNYNQAHQDYNSSQELAKGG
ELGTQYPSSGWATAQQRSHHPPISPGSSGQPLPRTQPTSPMDQMGMKRPQPYGGSNNPYA
QQAPPQQSGPYPGQPYGPPAPQRYPVGVQGRAQGTMGGGLQYPQQMPPYNQQGAAGYCQQ
GQTPYYNQQQPSYPQQQRFPVQQQDLSQEAFATQTPQGLTSNKPNQEELTLMQQGRPSSL
PDLSGSIDDLPTGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSP
VGSPASVTQSRSGPLSPAAVPGNQMPPRPPSGQSDGILHPSMNPSAMGQDRGYMQRPPQL
PQYSSPQTGSALSPRQPSGGQMHAGMSPYQQNNSGNYGPQGAQYGPQGGYPRQPNYNTLP
NTNYGLGGTMNALTAGNQMHGQGPAPPYVGMPPGRMGPAAMGNRPYGGNMTPNAANLSAQ
MSSGMCPPPAMNRKAQDAAVAVMHAAANSVQNRQPGYPNLNQGGMMGAGSPYSQGMNSMA
GMMNPQGSPYSMAGNMANSSAVMTPSPEMMALGEGKLPPTQKANNKADGMTKAELKSKKA
NSSTTTNEKISKLYELGMEPERKMWIDRYFAFMEEKGTMMTNLPAVGRKPLDLYRLYMSV
KDIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLFAFECKIERGEDPPLDIF
ASVDSKKQQPKIQPPSPAGSGSLQGPQTPQSTSSSMAEGGDIKPPTPVSTPHSHVQPMPG
SRSNSVSVQDPFADSSDPAFQKRTTVTQNPAYPPNMNTTDLMARMPYEPNKDPFGGMRKA
PGADPFMSPGLAPNTGMGDPYNRPPATGMGQRQQYAYGSGFERRSEHGMGPEGTLGPVTA
QPSVVPVNADSGMYSPNRYPGQQRHDPYGNQYPGQGVPAGQSYSNQQPGMFPQQQQQNFK
RQMDGSYGPPAKRHEGEMYGMPYTAQQSQQDLYNQYSNAYPGSDRRPVQNQFPFQYGRER
MQGPPGSTSQQPVPPQMMGPLQSPPEGPQGTVWPGRNDMAYNYPNRQGPGAPPQASGFHS
MNRSEEMMGPDQRMNHEGQWASHVNQRQPSFTPSTPLPPITRPSQSTYQTPPSVPNHLSQ
VSSPAPMPRPLENRTSPNKSPFLHSSMKMQKVGPPIPASHISVPSTQPPLMRRDITFPPG
SVEASQPVLKSRRRLTTKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSSVATF
TLSQLPGFLELLVEYFRRCLIEIFGILKEYEIGDPGQKTLLDPERFGKLKLQSEFEEEED
EYVISEEEMAANMTEDTNAIESTEENPKHISKFDRLPVKIVRKSDQFVVDRSDKLGRVQE
FDSGLLHWQIGGGDTTEHIQTHFEGKTQVLPRKRTTPHAGSVKRHTVESKKVTAEGETET
TAMVEGSEKSITATMDDVLSARPGSLNKEAVNGSVEGNMESSKFPFAIHQAQSHKNIKIL
EDEPCSRDEVPLCMMADWQDSLAKRCICISNIVRSLSFVPGNDAEMSKHPGLLLILGKLI
LQHHEHPERKQAPLTYEKEDEEDEGVSCDSDEWWWDCLEVLRENTLVTLANISGQLDLSL
YPESICLPILDGLLHWAVCPAAEAQDPFPTLGPNVMLSPQRLVLESLCKLSIQDSNVDLI
LATPPFSRLEKLYGILVRLIGERKSQVCREMCVVLLANLAQGDSLAARAIAVRKGSISNL
LGFLEDSLAATQLQQSQPSLMHLQTAPIEPTSMDMMRRAAKALLAMAKVEENHSEFTLHE
ARLLDISVSPLLNSLVTNVICDVLFMIGQS
NT seq
6213 nt
NT seq
+upstream
nt +downstream
nt
atggccgctccggtcagcgccctcagagacaccgaaatgagccaggccaaggccggcgag
ctggcggcgctgaagccggggactgggcccggccccaccgccgagcaggagcatcacctg
ccgggcaacggctcggagcccggcgccgccgctagggagaccttcagcaaccaccggctg
agcgcggccccggtgccgggcgagcacagcgacgaggacagcggccacccgccgcacggc
gagcaggatggggcctcctcctcggagcagagtaacggcggagcgggttccggggagcca
gagcccggacgggctactgccaccagcctcgctctcctaagcggcgaccagagattcgac
cattccagcaacagcggtggtgctgtgcccctgggcaacgcgaacccggggcccagtccc
ggcccaggcgccgtgccgcctaccggttacggttacaaccattaccggggcccgttccac
caacatggcggacaacaaagccccggcatgggggcagcgctacaacccggcggcctcgac
tccttccagcccaactctcacgaggctttctccgggcactacaacaactacaccacgtct
tatccggcggcccgtagtggttacatgaaccagaactacggcctcaactcgccgcgggcc
ggggctgctgggcctaaagccttggcctcgggtatggtcgcttctttccagcgcttcggt
gggcaacagcagcagtcggcgcagggccccggcctccaacagcatcaacaaccacagacg
gcctccagtaccccaaccctcaaccagctgctcacctccccgagtggggcccgggctttt
actaactataaccaggcccaccaggactacaatagcagccaggagctggccaagggaggc
gagctgggaacccagtatcccagctcgggctgggcaacagcgcaacaaaggagccaccat
ccgcccatcagccccgggagtagcgggcagcctttgcctaggactcagccaactagccca
atggaccagatggggatgaaaagacctcagccatatggcggcagcaataatccatatgca
cagcaggcaccaccgcaacagagcggaccttacccaggacaaccgtatggacctccagcg
cctcagcgctatcccgtgggtgtgcagggccgggcccaaggcaccatgggtggcgggctg
cagtacccacaacagatgcctccatacaaccagcagggtgcagccggttactgtcagcag
ggccagacaccatattacaaccagcaacagccttcctatcctcaacaacaacggttccca
gtacagcaacaggatttgtctcaggaagcatttgccactcagactccacaggggttgact
tccaacaaacccaatcaggaggagctgactctcatgcagcagggacgtccatccagcttg
ccggatttgtctggttctattgatgatttgccaactgggacagagggagcactgagtcca
ggagtgagtacatcaggaatctccagcagtcaaggggaacaaagtaaccctgcacagtca
ccgttctctcctcatacctccccacatctgcctggaattcgtggtccatcaccttcacct
gtaggatcgccagctagtgtaacccagtcccggtctgggccactgtccccagcagctgta
ccaggtaatcaaatgccacctcgccctccaagtggccagtccgatggaattctgcaccct
tccatgaatccatctgctatggggcaggaccgaggctacatgcagagaccccctcagttg
ccacagtacagctccccacagacagggtcagcattgtcaccacgtcagccttctggaggt
cagatgcatgctgggatgagcccatatcaacagaataactccggaaactatgggcctcaa
ggtgcccagtatggacctcaagggggctatccgagacagccgaactataacacactgccc
aatacaaactatggcttgggaggcaccatgaatgcattgactgctggtaaccagatgcat
gggcagggtccagccccaccttacgttggaatgccacctgggaggatgggccctgcggca
atgggtaaccggccgtatggaggcaatatgacaccaaatgcagcaaacctatcggcacaa
atgagctcgggaatgtgcccaccaccagcaatgaaccgcaaggctcaggatgcagccgtt
gctgtgatgcatgcagcagctaactcggtacagaacaggcaacctggctacccaaacttg
aatcagggaggaatgatgggtgctggctccccgtacagtcaaggtatgaacagtatggct
ggcatgatgaatccacagggatctccatattccatggctggaaacatggcaaatagttct
gcagttatgactcccagtccagagatgatggcacttggtgaaggaaagttaccaccaacg
cagaaagcaaacaacaaggcagatggaatgacaaaagctgagcttaagtcaaagaaggcc
aactcttccacgaccactaatgaaaagatctctaaattgtatgagctgggcatggagccg
gagcgcaagatgtggatcgataggtactttgcatttatggaagagaaggggacgatgatg
accaatcttcccgcagttggcaggaagccgctggacctttatcgactctatatgtctgtc
aaggatattggaggactaacacaggtgaataaaaacaagaaatggcgtgaactggccacc
aacctgaatgtgggaacctcaagcagtgcagccagctcactgaagaaacagtatatccag
tgtttgtttgcttttgagtgcaagattgagcgaggggaggatccaccactggacatcttt
gcttctgtagattccaaaaaacaacaaccaaagatacagcctccttctcctgctggttca
ggttctctgcagggtcctcagaccccacagtccaccagcagctcgatggcagagggagga
gatataaaaccaccaacgcctgtatcaacaccccatagccatgttcaaccaatgccaggt
tccaggagcaactctgtgagtgtccaggatccatttgcagacagtagtgatccagctttc
cagaagaggaccactgtgactcaaaaccctgcatacccgcccaacatgaacaccacggat
ttaatggcccgcatgccatacgagcccaacaaggatccatttggtggaatgaggaaagct
cctggagctgaccctttcatgtctcctggacttgctcccaatactggaatgggagaccct
tacaatcgccctcctgcaacaggtatggggcaacggcagcaatatgcatatggatctgga
tttgagaggaggtctgaacatgggatgggcccagagggaactttgggaccagtgacagcg
cagcctagtgtggtgccagtcaatgcagattccggcatgtactctccaaaccgttatcca
ggacagcaacggcatgatccttatggaaaccagtatcctggacagggggttccagctgga
cagtcttattctaaccagcaacctggaatgtttccacagcagcaacagcaaaacttcaaa
cgccagatggatgggtcgtatggacctccagctaagcggcatgaaggtgaaatgtatggg
atgccctacacagcccagcaatctcagcaagatctgtataaccagtacagcaatgcttat
cctggttctgatcgtcggccagtgcagaatcagtttccttttcagtatggtagagagaga
atgcaaggtccccctggctcaacctcgcagcagcctgtgcccccacagatgatgggccca
ctacagtctcctcctgaaggaccacaaggtactgtgtggccaggacgaaatgacatggct
tacaattacccaaatcggcaaggtcctggtgcgccaccacaagcttcaggatttcacagc
atgaatcgttctgaagagatgatgggacctgatcagagaatgaaccatgaagggcagtgg
gcttcccatgtcaaccaacgccaaccatcattcaccccctctactcctcttcccccaatt
acaaggccatcccagtccacctaccaaactcctccatcagtgccaaaccatctttcccag
gtctctagcccagctcccatgccacgaccgttggagaaccgtacctcacccaataaatca
ccatttctgcattcaagcatgaagatgcaaaaggttggacccccgattcctgcatctcac
atttcagtaccctctacgcagcctccactgatgagacgagacatcacttttcctcctggt
tctgtagaagcatctcaaccagtcctgaaatctcggcgcaggctcaccactaaggatatt
ggcaccccagaggcttggcgggtgatgatgtcccttaaatctggcctcctggctgaaagt
acctgggccttggataccattaatattttactatacgatgatagcagtgtagccaccttc
acactctctcagttacctggattcttggagcttctggtggagtatttcaggcgatgcttg
attgagatatttggaattctgaaagaatatgagatcggggaccctggccaaaagacactg
ctggatccagagcggtttggaaaattaaaactgcagtcagagtttgaggaggaggaagac
gagtacgttataagtgaggaagaaatggcagctaatatgaccgaggataccaatgccatt
gagagtacagaggaaaatcctaagcacatcagcaagtttgatagacttcctgtgaaaata
gttagaaagagtgaccaatttgtggtggatcgttcagataagttgggcagggtgcaggaa
ttcgacagtggattgctacactggcagattgggggaggtgacactacagaacacatccaa
acacactttgagggtaagacgcaggtactgccgcgaaaacgaacaacaccccatgcagga
tctgtgaaaaggcacacagtcgagagcaaaaaagtgacagcagagggtgaaactgagaca
acagcaatggttgaggggtccgagaaaagtataactgcgaccatggatgatgttctgtca
gctaggcctggctccttgaacaaggaagctgtaaatggctcagtagaagggaacatggag
agcagcaaatttccttttgctattcatcaggcacaaagtcataaaaatatcaaaattctt
gaggatgagccttgcagcagggatgaggtaccgttatgtatgatggcagactggcaggac
tctttagcaaagcggtgcatctgtatatcaaatatcgtccgcagcttgtcttttgtgcct
gggaatgatgcagagatgtcaaagcaccctggcttattgctcatcttaggcaagctgatc
ctgcagcaccatgaacatcctgaacggaaacaggcaccgttaacatatgaaaaggaggat
gaggaggatgaaggcgtcagctgtgatagtgatgagtggtggtgggattgtttagaagta
ttacgggaaaacactcttgtcacattggccaacatttctgggcagctggacctgtctctg
tatccagagagtatctgcttgccaattctggatggattgttgcactgggctgtgtgtcct
gcagcagaagcccaggaccctttcccaacgctaggacccaacgtaatgctctctccccag
agacttgtcctagagagcttgtgtaaactcagtatccaggacagtaatgtagacctgatc
ctggcaacaccaccttttagccgcctggagaaactttatgggatattggtccgactcatt
ggggaacggaaaagccaggtgtgtcgtgaaatgtgtgtggtgctgttggcaaacttggca
caaggagatagcctggctgcccgagcaattgcagttcgaaagggaagcatcagtaacctt
ctgggttttttggaggatagccttgctgccactcagctccagcagagtcagcccagcctc
atgcacttgcagactgcacctattgagccaacaagtatggacatgatgcgccgggcagct
aaggccctgctggcaatggcgaaagtagaagaaaaccactctgagttcacattgcatgag
gcgcgactgctagatatctctgtatcgcccctcctgaactctctggttacaaatgtaatt
tgtgatgtactcttcatgataggccagtcatga
DBGET
integrated database retrieval system
