Rhincodon typus (whale shark): 109937839
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Entry
109937839 CDS
T06055
Name
(RefSeq) synaptosomal-associated protein 23-like isoform X1
KO
K08508
synaptosomal-associated protein 23
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
109937839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109937839
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109937839
Membrane trafficking [BR:
rtp04131
]
SNARE
SNAP-25 (Qb,c)
SNAP-23
109937839
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
109937839
Exosomal proteins of other body fluids (saliva and urine)
109937839
Exosomal proteins of colorectal cancer cells
109937839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNAP-25
DUF5089
DUF16
Sec20
Motif
Other DBs
NCBI-GeneID:
109937839
NCBI-ProteinID:
XP_020391925
LinkDB
All DBs
Position
8:78913958..78942290
Genome browser
AA seq
242 aa
AA seq
DB search
MRRGACAVRGWESTETGEKGEGLRWRGLGPVNMADMSVEDIQVRANQVTDESLESTRRML
QLAEESRDAGGKTMIMLDEQGEQLRHIDEGLDQINQDMREAEKNLTDLTKCCGLCVCPCS
RVKNFEMGDSYKKAWGSDADGNTGRVVSNQPGNIQNHHEMVRRGGEGEGYVTRITNDARE
DEMEENLQQVGSIIGNLKNMAIDMGNEIDAQNKKIDSISGKADTNIARIDEANQRANKLI
QN
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcggggcatgcgcagtgagagggtgggaatcgaccgagaccggagagaaagga
gaggggttgcggtggagaggtttggggccagtcaatatggcagacatgtctgttgaggac
atacaggtccgagcaaaccaggtgaccgatgagtccctggagagtaccaggaggatgctg
cagctggcggaggagagcagggatgctggtggcaagactatgatcatgctggatgagcag
ggagaacaactgaggcacattgatgaagggctggatcagatcaaccaggatatgagggag
gcggagaaaaacctaactgacctcaccaaatgctgtggcctgtgtgtgtgtccttgcagt
agggtgaagaacttcgagatgggggattcatacaagaaagcctggggtagcgatgctgat
gggaacactggcagagttgtctccaatcagccaggcaacatccagaatcaccatgagatg
gtcagaaggggcggcgaaggagaaggctacgttaccaggataaccaatgacgctcgagag
gatgaaatggaagaaaacctgcagcaagtgggcagtatcattggaaacctgaaaaatatg
gccatcgacatgggcaatgaaatcgatgcccagaacaaaaagattgactccatttctggg
aaggctgatactaacatagctcggattgatgaagccaaccagagagcaaacaaactcatc
cagaattaa
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integrated database retrieval system
