Rhincodon typus (whale shark): 109937867
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Entry
109937867 CDS
T06055
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109937867 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
109937867 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109937867 (lsm4)
03041 Spliceosome [BR:
rtp03041
]
109937867 (lsm4)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109937867 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
109937867 (lsm4)
Spliceosome [BR:
rtp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109937867 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
109937867
NCBI-ProteinID:
XP_048469972
LinkDB
All DBs
Position
29:complement(38972049..38980229)
Genome browser
AA seq
142 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWKMPECY
IRGSTIKYLRIPDEIIDMVKEEVLSKGRGRGIQQQKQQQQQKGRGAGGAAGRGVFGGRGR
GVAGVNRGQEKKPGKLSGMKKP
NT seq
429 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccctttcattacttaagacggcacagaatcatccaatgcttgtggagctgaag
aatggagaaacgtacaatggtcatctggtcagctgtgacaactggatgaatatcaacctg
cgggaagtcatttgtacatccagggatggggataagttctggaagatgccggaatgttat
attcgtggcagcaccatcaagtacctccgcatcccggatgaaatcatcgacatggtgaaa
gaggaggtgctgtcgaagggccgaggccgtggcatccagcaacagaagcagcaacaacaa
cagaaaggccgtggtgcaggtggcgcagctggcagaggtgtttttggtggacgtggacgt
ggagtggccggagtcaacagaggacaagagaagaagccaggaaagttatcgggaatgaag
aaaccatga
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integrated database retrieval system
