Rhincodon typus (whale shark): 109938103
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Entry
109938103 CDS
T06055
Symbol
si:ch211-11n16.2
Name
(RefSeq) zinc finger FYVE domain-containing protein 1
KO
K17603
zinc finger FYVE domain-containing protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109938103 (si:ch211-11n16.2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtp01009
]
109938103 (si:ch211-11n16.2)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109938103 (si:ch211-11n16.2)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109938103 (si:ch211-11n16.2)
Protein phosphatases and associated proteins [BR:
rtp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109938103 (si:ch211-11n16.2)
Membrane trafficking [BR:
rtp04131
]
Autophagy
Other autophagy associated proteins
Others
109938103 (si:ch211-11n16.2)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Other mitophagy factors
109938103 (si:ch211-11n16.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FYVE
GBP
MMR_HSR1
YfhO
Motif
Other DBs
NCBI-GeneID:
109938103
NCBI-ProteinID:
XP_020392154
LinkDB
All DBs
Position
39:complement(4534841..4554588)
Genome browser
AA seq
630 aa
AA seq
DB search
MPEMQQPNRTSPQSVPDEETFVKKLGVPGDQAVKVLSIFGNTGDGKSHTLNATFFGGREV
FRTSDTQDSCTVGVWAAYEPCLGLVLLDTEGLLGATSKQDRRRRLLLKVLAVSDLVVYRT
RAERLHNDLFRFLGNASRAYLRHFSHELQAASQRLGLGLSLSSLGPALIIFQETSNTKTL
GGDSQTPGNAEQLLQKRFHLLGLSTEAFNSVEYVGTRTAGTPTDFSGFLEVVRQRANSTL
TRSRRSPAIVYNVLKALSLRFDGEITDSRIVIDCFFPDEYFSCSSVCLSCGAHCTNSMNH
LKDSVPHEAAGRCRYMHQYNNKVLICRVCYERGWEVTVNPKTSASTDSKWLGLATYVWSG
YVLECPNCGIIYRSRQYWIGNQDPEASVVRPELKHVWLGMESFLGTNHNGAQRVLDGVNF
VIQSVSEYSTGPSKAITSWLTDQVAPDYWRPNSQIMECHQCKKRFEDGDRKHHCRACGEG
CCDACSSKSMPVPERGWGTAAVRVCDDCFRTGGNSTGKELESAREGTGLLARRITEAAQS
TLDTMASAVEYPLGFVKEVARPDYWVPDHELVKCHRCAKPFSGTTAKHHCRACGLGVCGQ
CSPELRTVPSRGWHHPVRVCLECSENKGEL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaatgcagcagccaaatcgcacctcaccacaatccgtgccagacgaggagacg
tttgtgaagaagctgggagtgccgggggaccaagctgtcaaagtcctctccatctttggc
aacacgggggacgggaagtcacataccttgaacgccactttcttcggcggccgtgaggtg
ttccgcacctcggacacccaggactcctgcaccgtgggcgtgtgggcggcctacgagccg
tgcctgggcctggtcctgctggacacggagggcctgttgggggcgaccagcaaacaggat
cggaggcgccgactgctcctgaaggtgctggccgtgtctgacctggtggtgtacaggacg
cgggccgagcggctgcacaacgacctcttccgtttcctgggcaacgcctcgcgtgcctac
ctccgccacttcagccacgagctgcaagccgcgagccagcgcctcggcctcgggctttca
ctctccagcctcgggcctgccctcatcatcttccaggagacctccaacaccaagacgctg
ggtggcgactcgcagactccagggaatgccgagcaactgctccagaagcggttccacttg
ctcggtttgagcacggaagcgttcaactctgtcgagtatgttggcacaaggacagcgggc
acccccaccgacttctctggcttcctggaggtggtacgtcaacgggccaacagtacgttg
acccgctctcggagatcaccagccattgtctacaatgtgttaaaggctctgagcctccgc
ttcgacggtgagataacagacagcaggattgtgattgactgcttttttcctgacgagtac
ttcagctgctctagcgtgtgcctcagttgtggggctcactgtacaaacagcatgaatcat
ctgaaggacagcgtcccacatgaggcagctgggagatgtcgatacatgcaccaatataac
aacaaggtgttaatctgcagggtgtgctatgagcgaggctgggaagtaactgtcaatccg
aaaacctccgcatccacagacagcaagtggttgggacttgcaacttatgtctggtctggg
tatgttctggaatgtccaaactgtgggattatctaccgcagcagacagtactggattgga
aaccaagatcctgaggcatctgtcgtacgtcctgagctaaaacacgtgtggcttgggatg
gagtcgttcctggggacgaaccataacggggctcagcgagtactggacggcgtcaacttt
gtgatccagtcggtctccgagtacagtacagggccaagcaaagcgatcacctcttggctg
acggatcaagtggccccagattattggaggcccaactcccagatcatggaatgccatcag
tgcaagaaacgttttgaggacggggaccgtaagcatcactgtcgggcatgcggagagggt
tgctgtgatgcctgctccagtaaaagcatgccagtcccagagcggggctgggggactgct
gcagtgagagtgtgtgacgattgcttcagaacaggtgggaacagcacaggaaaggagctg
gagtcggcgagagaaggcacagggttactggcgcgcaggattacagaggcggcgcagagc
actctagatacgatggcttcggcagtcgaatatcctcttggatttgtcaaggaggtggcg
aggcctgactattgggtgccggatcacgagctggtcaagtgtcaccgctgcgcgaagccc
ttttctggcacaacggccaagcaccactgccgagcctgcggcctaggcgtttgtggtcag
tgctccccggagctgaggactgtgccatctcggggctggcaccacccggtcagggtctgc
ctggagtgtagcgagaataaaggggagctctga
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