Rhincodon typus (whale shark): 109938449
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Entry
109938449 CDS
T06055
Name
(RefSeq) CPD photolyase isoform X1
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109938449
Enzymes [BR:
rtp01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
109938449
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
109938449
Prokaryotic type
109938449
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
DUF5553
Motif
Other DBs
NCBI-GeneID:
109938449
NCBI-ProteinID:
XP_048460752
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All DBs
Position
13:26650547..26684508
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AA seq
606 aa
AA seq
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MSKNDKQAHETTRCNANDSEYKKNIEKKSDKKKTAFSSLSNSLKTSTKVSMKKPNHNGSC
REDSPKLQSKGKRKVEDRAPRLIEGEMSNPRMNKKRKIEDQAEASPSRERNLLESINKSR
LSTAKSVEEFNFNKKRIRLLSKTESIRENSQGIIYWMSRDQRVQDNWAFLYAQWLALKHK
LPLHVCFCLVPKFLDATIRHFGFMLKGLHEVAEECKQLNISFHLLIGFAKDVLPDFVKEH
NIGGMVTDFSPLRLPLEWIENVRYNLPEDIPFIQVDAHNVVPCWVASDKQEYSARTIRKK
IHDKLPQFLTDFPPVIQHPFSSSLKAELIDWDAAAASLQVDRTVKEVDWAKPGTAAGLTR
MESFINEQLKHFNTDRNNPSKTALSNMSPWFHFGQISVQRAVLEIRKYRNKFKDSVDSYI
EEAVVRRELADNFCFYNKQYDKIAGASDWAQKTLQMHSKDKRPYVYTLKELEDGRTHDSL
WNAAQLQMIHEGKMHGFLRMYWAKKILEWTASPEEALQFSIYLNDRYELDGRDPNGYVGC
MWSICGIHDQGWKERPIFGKIRYMNYNGYIQYSSSRLYWNVMDKKICFIIGLYQLPCHLS
QDIALQ
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagaatgataaacaagcccacgagacgactcgttgcaatgctaacgattctgag
tacaagaaaaatattgaaaagaaatcagataaaaagaaaactgcattttccagcttgtcc
aacagtctgaaaacatccacaaaagtatcaatgaagaaacctaatcataatggctcctgt
cgggaagattccccaaagcttcaatctaagggaaaaagaaaagtggaagacagagctcca
agattaattgagggagaaatgtccaatcctaggatgaataaaaagaggaaaattgaagac
caggctgaggcgtctccctctagagaaaggaatctgttggaaagtatcaataagtcacgt
ttgtccacagcaaaatcggtggaagaatttaattttaacaaaaaacgcatccgtctcctt
tctaaaacagagagcatcagggaaaactctcagggaattatttactggatgtcccgcgac
cagagagtacaggataactgggctttcttatatgcacaatggctagctcttaagcataaa
ctcccactccatgtctgcttctgtctggtgcccaaattcctagatgccaccatccgccat
tttggtttcatgctgaagggactccacgaggttgctgaggaatgcaagcagctgaatatt
tctttccatttacttattggattcgccaaagatgtattgccagactttgttaaagagcac
aacattggagggatggttacagatttctctccattgcgtctcccactggagtggattgag
aatgtgagatacaacctaccagaagatataccatttattcaggtcgatgctcacaatgtt
gtaccctgctgggtagcttcagacaaacaagaatacagtgccagaacaatcaggaagaaa
attcatgataaactccctcagttcctgacagattttcctccagttatccagcatcctttt
agctcatccctgaaggcagagctgattgattgggatgcagccgcagcaagccttcaagtg
gatcgtacagttaaggaagttgactgggctaaacccgggactgcagcaggtctaactagg
atggagtcattcattaacgagcagcttaagcatttcaacactgacagaaacaacccaagt
aaaactgccttgagtaatatgtcaccatggtttcactttggtcagatttcagttcagcga
gcagttctggaaataaggaaataccgcaacaagtttaaggacagtgtggacagctatatt
gaagaagctgtagtacgacgggagctggcagacaacttttgtttttacaataaacaatat
gacaagattgcaggtgcttctgattgggcacagaaaactttgcaaatgcacagcaaagac
aaacggccatatgtttatacgctgaaagaactggaagatgggcgaacacatgattctttg
tggaatgcagcacagcttcagatgatccatgaggggaagatgcatggttttcttcgaatg
tactgggctaaaaagattttagagtggactgcttcacctgaggaagccttacagttctcc
atctacctgaatgatcgctatgaactggatggcagagatccaaatggatatgtaggttgc
atgtggtcaatctgtggaatccacgaccaaggctggaaagagcgaccaatctttggcaag
attcgctacatgaattataatggctatatccaatattcatcttcacgattgtactggaat
gtcatggacaagaaaatctgttttattattggtttgtaccaacttccatgccacttgagt
caagacattgcattacaataa
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