Rhincodon typus (whale shark): 109938561
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Entry
109938561 CDS
T06055
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109938561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109938561
03036 Chromosome and associated proteins [BR:
rtp03036
]
109938561
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109938561
Coactivators
SAGA/TFTC/STAGA complex
109938561
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
109938561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
109938561
NCBI-ProteinID:
XP_048452193
LinkDB
All DBs
Position
4:117372940..117495856
Genome browser
AA seq
778 aa
AA seq
DB search
MPTPSVPRREAESGGLPPAPASSNNDSSQASPCPPLPQNGPGPDTGPAATPASSSPAVPL
PQPPVPATSPVPTPLRVVPLPDQAGPHAGAGAQSRPLSGGGGSSGGMPPSPALMKTVAVS
TTAAAATGNPLPASRAPTVTVQRISVSSPQVKTSSPLLQNLQVPAGMVLVRSDSGQLVLV
PQKVIAQAQAKARAQGAGNTSSAVSTGTPSVRISTIQATGTQRIPNQVKTSTQQMNQFQA
GGQTSATPQRITVVQPQAAGGAIVPKTVSTIVQKQALAPADRSVTVPVVQTAASPETLEN
VKKCKNFLATLIKLASSGSQSPQMSSNVKALVQKLLDGKMEVEEFTDQLYKELKSSPQPY
LVPFLKRSLPALRKLMPNSQAFIQQCLQKPATPAAPIAALSGVSKQVSPGQASKNITVTS
ASQPTKVLQTLPSPQVVVQQSGVLIKSQASTLPQTQTVTLQKPPNHIIVPVPQNQAKETP
AGAATLVTKVTLAQVNKNPTSVLLRASPGQILKKEVGGTTFREEDDINDVASMAGVNVNE
ESARILATNSELVGTIIRSCKDEAFLSSASLQKKALEIGKIHGVTEVNSDVLSTISHATQ
EHLRELVEKLTVIAQHRMMTYKDDDRYSLLNDTRSQLKFFEQLDRLEKQRKDEDEREALL
RLAKSRAKHEDPEQLRLKQKAKEMQQLELAQLQQQEANLAALAAIGPRKRKMPDSPGLRT
GNEGLSGSGNAAGGLRATQARPYLRQRVTRVNLRDLILCLEQDQARKHSLLLYRAYLK
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccccgagcgtcccgcggcgcgaggcggagagcggcggcctcccccccgccccg
gcctcctccaacaacgacagttcccaggccagcccgtgccccccgctacctcagaacggg
cctgggcccgacaccgggccggcggcgacaccggccagctcttcacccgctgtccccctt
ccccagccgccggtcccggctacctctcctgtaccgacccctctccgagtcgtgccgcta
cccgatcaggctggaccccatgcaggcgctggcgctcagtcccggcccctttcaggaggc
ggtggtagtagcggcgggatgcctccctccccggcgttgatgaagaccgtggcggtaagc
accacggcggcggcagcaaccgggaacccgctcccagcctccagggctcctactgtcacc
gtccaaaggatcagcgtctcttccccgcaagtcaaaacctcttccccactcctgcaaaac
ctccaggtgccagcaggtatggtgcttgttcgaagtgacagtggacagttagtgttggtt
ccacagaaagtaattgctcaggctcaggctaaagcccgagcacaaggagctggaaacacc
tcatctgcagtgtctactggcacaccttcagtccgaatttctaccatacaggcaactgga
acccagaggattcccaatcaagtgaaaacatctacccagcaaatgaaccaattccaagct
ggaggccagacaagtgctacaccacaacgcatcacagtagtgcagccgcaggctgcaggt
ggagcaattgtaccaaagactgtatcaaccattgtccaaaagcaagcattggcaccagca
gaccgatcagttactgtgcccgtagtgcagacagctgcttctccggaaactttggaaaat
gtgaagaaatgcaagaacttccttgcaacattaattaagctggcttccagtggttctcaa
tcaccacaaatgtctagtaatgtgaaggctttagtgcagaaactgttggatgggaagatg
gaagtagaggaattcacagaccagttgtataaagagctcaagtcttcaccacagccttac
cttgtgccttttctcaagcgaagtttacctgccttgcggaagttgatgccgaattctcag
gctttcattcaacagtgcctacagaaacctgcgactccagctgctcccattgcagctctg
tccggagtgtcaaaacaagtcagcccagggcaggcatcaaagaacatcacagtaacaagt
gcttcacagccaacaaaagtcctgcagaccttgccatcgccgcaggtggttgtccaacag
tctggagtactaataaagtcacaagcaagcacgctgccacagactcagacagtgactttg
caaaaacccccaaatcatatcattgtgcccgtacctcaaaatcaggccaaagaaactcca
gcaggtgctgcaacattggtcacaaaagtaacactcgcacaagttaacaagaatccaaca
agtgttctactacgagcctcgcctggtcaaatactgaaaaaagaggttggaggcacaact
ttcagggaggaggatgacatcaatgatgtggcctccatggctggggttaatgtcaatgaa
gagagtgcacgcattcttgcaacaaactccgaattggtgggcactatcatccggtcctgt
aaagatgaagcatttctctcctctgcatccctgcagaaaaaagctttggaaatagggaag
atacatggtgtgacagaggtgaattctgacgttttgagcaccatatctcatgcaacgcaa
gagcatttacgggaacttgtggaaaagctcacggtaatagcacagcaccggatgatgaca
tacaaggatgatgaccgatacagcctattgaacgatacccggtcacaactgaagtttttc
gagcagttggatcgactggagaaacagcggaaagatgaagatgaaagggaagcactgcta
agattagcaaagagtcgagccaagcacgaagacccagaacaacttaggttaaagcaaaaa
gccaaagagatgcaacaattagaacttgcacagctgcagcaacaggaagcaaatcttgca
gcactggctgccattggaccaaggaaaagaaaaatgcctgattcgccaggtctccgaaca
ggaaatgagggattgagcggcagtggcaatgcagctggtggtcttcgagcaacacaggcc
cgaccctacctacggcagagggtaacacgagtcaatctcagggatctcatcctctgcttg
gagcaggaccaagcaaggaaacactcgctgctcctataccgagcctatctcaagtga
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