Rhincodon typus (whale shark): 109939043
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Entry
109939043 CDS
T06055
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109939043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109939043
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109939043
mRNA degradation factors
5'-3' decay
Lsm complex
109939043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
109939043
NCBI-ProteinID:
XP_020392919
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All DBs
Position
20:complement(31115454..31132248)
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AA seq
149 aa
AA seq
DB search
MQDVMSPKARNFRRSKMNYMPGTASLIEDIDKKHLVVLRDGRTLIGYLRSVDQFANLVLH
RTVERIHVGRKYGDIPRGIFVVRGENVVLLGEIDLERETDTPLQRVSIEEILEAQRVQQH
EKQEAEKAKSEALRERGLSIPRTDTLDEY
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatgtgatgtcaccaaaagcgcgcaatttccggaggagcaagatgaactacatg
ccagggacagcaagcctgatagaggatatcgacaaaaaacatttagtagtacttcgagat
gggagaacattaataggatatttaaggagtgtagatcaatttgctaatttggttcttcat
cggacagtggaacgaatccatgtaggaagaaaatacggtgacattcccagagggattttt
gttgtccgaggagaaaatgtggtgcttctgggggaaatagatctggaaagggagactgat
actcccttacagagggtgtctattgaggagattctggaagctcaaagagttcagcagcat
gaaaaacaagaagcagaaaaggcaaaaagtgaagctttgagagagcgaggattatctatc
ccccgtacagatactcttgacgaatactaa
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